Detailed information NTG0641910

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LY388_RS06580
• Genome accession: NZ_CP090387
• Coordinates: 236879..237886 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain GXFL1-4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 231879..242886

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LY388_RS06560 (LY388_06560)	metJ	231884..232201 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
LY388_RS06565 (LY388_06565)	-	232311..233588 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
LY388_RS06570 (LY388_06570)	rpmE	233896..234114 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
LY388_RS06575 (LY388_06575)	priA	234369..236573 (+)	2205	WP_001247900.1	primosomal protein N'	-
LY388_RS06580 (LY388_06580)	cytR	236879..237886 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
LY388_RS06585 (LY388_06585)	-	238058..238609 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
LY388_RS06590 (LY388_06590)	hslV	238746..239303 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
LY388_RS06595 (LY388_06595)	hslU	239369..240700 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
LY388_RS06600 (LY388_06600)	-	240804..241721 (+)	918	WP_001893061.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LY388_RS06605 (LY388_06605)	rraA	241796..242311 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=641910 LY388_RS06580 WP_000224452.1 236879..237886(+) (cytR) [Vibrio cholerae strain GXFL1-4]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=641910 LY388_RS06580 WP_000224452.1 236879..237886(+) (cytR) [Vibrio cholerae strain GXFL1-4]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTAAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904