Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LZG54_RS12895 Genome accession   NZ_CP090382
Coordinates   2688457..2689614 (+) Length   385 a.a.
NCBI ID   WP_234114159.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2683457..2694614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS12880 (LZG54_12895) - 2685156..2687195 (-) 2040 WP_234114157.1 TonB-dependent copper receptor -
  LZG54_RS12885 (LZG54_12900) - 2687261..2687689 (-) 429 WP_234115034.1 DUF2946 family protein -
  LZG54_RS12890 (LZG54_12905) def 2687805..2688335 (-) 531 WP_234114158.1 peptide deformylase -
  LZG54_RS12895 (LZG54_12910) tsaP 2688457..2689614 (+) 1158 WP_234114159.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LZG54_RS12900 (LZG54_12915) dprA 2689632..2690855 (+) 1224 WP_234114160.1 DNA-processing protein DprA Machinery gene
  LZG54_RS12905 (LZG54_12920) - 2690905..2691474 (+) 570 WP_234114161.1 L-threonylcarbamoyladenylate synthase -
  LZG54_RS12910 (LZG54_12925) - 2691865..2692773 (-) 909 WP_096902732.1 DMT family transporter -
  LZG54_RS12915 (LZG54_12930) - 2693061..2693606 (+) 546 WP_234114162.1 glutathione peroxidase -
  LZG54_RS12920 (LZG54_12935) - 2693926..2694516 (+) 591 WP_234114163.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42132.31 Da        Isoelectric Point: 8.8408

>NTDB_id=641895 LZG54_RS12895 WP_234114159.1 2688457..2689614(+) (tsaP) [Acinetobacter towneri strain SCLZS30]
MKKVLTDTSSFRVLGFKKQVLALAVCLTVGLGAMSVAEAAPARNINPPALKANAPNVYVVKKGDTLWDISKKFLNNPLRW
PEIWASNRHVKNPHWIFPGDRLLMCTYEGRPIIGKDEGDGCEGIIRRYAGKSTNLQPQIRVESLNNTIPVIPLDYIKHWL
ERSSIIAADALQGTPYILGTSDQRVLAAKGQSVYARGVGLEVGQRYGVYREGEPYILTDANGQKFNAGIELTQVAAGIAV
RGENDITTLELTDTYNAEVRRGDRVLPIYDPMLPTLFYPTHAENVSAGGQVLRVMGSIGTAAKHSVVAIDRGTLHGVQSG
YVFSVTQKGEVVTDPKTKERVQLPGERIGNIMVFKSFDHISYAYVLDSELPIKVGASLQAPSMDD

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=641895 LZG54_RS12895 WP_234114159.1 2688457..2689614(+) (tsaP) [Acinetobacter towneri strain SCLZS30]
ATGAAAAAGGTTTTGACAGACACATCCTCTTTTCGTGTCTTGGGGTTTAAAAAGCAAGTTTTAGCGCTCGCTGTATGTCT
CACTGTGGGACTTGGGGCAATGAGTGTGGCTGAAGCAGCACCTGCACGAAATATTAATCCGCCTGCTTTAAAAGCCAATG
CACCGAATGTGTATGTGGTGAAAAAAGGCGATACTTTGTGGGATATTTCTAAAAAATTCCTGAATAATCCACTACGCTGG
CCTGAAATTTGGGCAAGCAACCGCCACGTGAAAAATCCACACTGGATTTTCCCGGGTGACCGCTTGTTAATGTGTACCTA
TGAAGGTCGCCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGCATTATTCGTCGTTATGCAGGCAAGAGCACCA
ATTTACAGCCGCAAATTCGCGTAGAATCTTTAAATAATACAATTCCTGTGATCCCACTGGACTACATCAAGCACTGGTTA
GAGCGCAGCAGCATTATTGCCGCAGATGCGTTACAAGGCACGCCTTATATTTTAGGTACTTCTGATCAGCGTGTTTTAGC
CGCTAAAGGACAAAGCGTGTATGCACGTGGTGTAGGCCTAGAAGTTGGTCAACGCTACGGGGTCTATCGCGAAGGCGAAC
CATACATCCTAACCGATGCCAATGGTCAAAAATTCAATGCAGGCATTGAGCTCACTCAAGTTGCTGCAGGGATTGCAGTA
CGTGGTGAAAATGACATTACTACGCTTGAGTTGACCGACACTTACAACGCTGAAGTGCGTCGTGGTGACCGTGTCTTGCC
AATTTATGACCCAATGTTACCAACGCTGTTCTATCCGACCCATGCTGAAAATGTCAGCGCAGGTGGTCAAGTGCTACGTG
TGATGGGGTCAATTGGTACCGCAGCAAAACACAGTGTTGTGGCGATTGATCGCGGTACATTACACGGCGTGCAATCTGGT
TATGTCTTTAGCGTAACGCAAAAAGGCGAAGTGGTCACCGACCCGAAAACCAAAGAGCGTGTTCAGCTTCCAGGCGAACG
CATTGGCAATATTATGGTCTTCAAGAGCTTTGACCACATTAGCTACGCCTATGTTTTAGACAGCGAATTGCCTATTAAAG
TTGGTGCCAGCCTACAAGCACCAAGCATGGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.195

100

0.652