Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LZG54_RS12485 Genome accession   NZ_CP090382
Coordinates   2599082..2599408 (-) Length   108 a.a.
NCBI ID   WP_178318322.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2594082..2604408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS12465 (LZG54_12480) - 2594304..2594954 (-) 651 WP_004975761.1 FHA domain-containing protein -
  LZG54_RS12470 (LZG54_12485) gspD 2595024..2597279 (-) 2256 WP_234114114.1 type II secretion system secretin GspD -
  LZG54_RS12475 (LZG54_12490) - 2597339..2598178 (-) 840 WP_234114115.1 type II secretion system protein N -
  LZG54_RS12480 (LZG54_12495) gspN 2598178..2598919 (-) 742 Protein_2411 type II secretion system protein N -
  LZG54_RS12485 (LZG54_12500) hns 2599082..2599408 (-) 327 WP_178318322.1 H-NS family nucleoid-associated regulatory protein Regulator
  LZG54_RS12490 (LZG54_12505) - 2599554..2599985 (-) 432 WP_234114116.1 acyl-CoA thioesterase -
  LZG54_RS12495 (LZG54_12510) - 2599995..2601188 (-) 1194 WP_234114117.1 heme biosynthesis protein HemY -
  LZG54_RS12500 (LZG54_12515) - 2601189..2602025 (-) 837 WP_178318319.1 hypothetical protein -
  LZG54_RS12505 (LZG54_12520) - 2602022..2602801 (-) 780 WP_234114118.1 uroporphyrinogen-III synthase -
  LZG54_RS12510 (LZG54_12525) hemC 2602823..2603743 (-) 921 WP_234114119.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12183.07 Da        Isoelectric Point: 9.5383

>NTDB_id=641890 LZG54_RS12485 WP_178318322.1 2599082..2599408(-) (hns) [Acinetobacter towneri strain SCLZS30]
MMPDISNLSVEQLKRLQAEAEALIATKKDQAIEDAYNQILAIADNLGLSIEQILEVGESKRMKSPRKTVAPRYRSKINST
DTWTGRGKKPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=641890 LZG54_RS12485 WP_178318322.1 2599082..2599408(-) (hns) [Acinetobacter towneri strain SCLZS30]
ATGATGCCTGATATTAGCAATTTGTCTGTAGAACAGTTAAAGCGTTTACAAGCTGAAGCGGAAGCATTAATTGCCACGAA
AAAAGATCAAGCAATTGAAGATGCCTATAATCAAATTTTAGCGATTGCAGACAATTTGGGTTTAAGCATTGAGCAGATTT
TGGAAGTTGGCGAAAGCAAGCGTATGAAAAGCCCACGTAAAACTGTAGCGCCACGTTATCGTAGCAAAATCAATTCTACA
GATACTTGGACTGGTCGTGGTAAAAAACCACGCTGGTTAGTCGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTTCT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

75

100

0.75