Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LZG54_RS11970 Genome accession   NZ_CP090382
Coordinates   2486110..2488332 (+) Length   740 a.a.
NCBI ID   WP_234114068.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2481110..2493332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS11945 (LZG54_11960) tusA 2481279..2481536 (-) 258 WP_178318649.1 sulfurtransferase TusA -
  LZG54_RS11950 (LZG54_11965) - 2481735..2482574 (+) 840 WP_004975954.1 CBS domain-containing protein -
  LZG54_RS11955 (LZG54_11970) lnt 2482571..2484127 (+) 1557 WP_004975952.1 apolipoprotein N-acyltransferase -
  LZG54_RS11960 (LZG54_11975) gspG 2484241..2484675 (-) 435 WP_004975950.1 type II secretion system major pseudopilin GspG -
  LZG54_RS11965 (LZG54_11980) gspF 2484752..2485957 (-) 1206 WP_234114067.1 type II secretion system inner membrane protein GspF -
  LZG54_RS11970 (LZG54_11985) priA 2486110..2488332 (+) 2223 WP_234114068.1 primosomal protein N' Machinery gene
  LZG54_RS11975 (LZG54_11990) - 2488405..2490246 (+) 1842 WP_234114069.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LZG54_RS11980 (LZG54_11995) hslO 2490297..2491172 (+) 876 WP_234114070.1 Hsp33 family molecular chaperone HslO -
  LZG54_RS11985 (LZG54_12000) - 2491430..2491894 (+) 465 WP_234114071.1 DUF2147 domain-containing protein -
  LZG54_RS11990 (LZG54_12005) - 2492147..2492607 (+) 461 Protein_2323 DUF2147 domain-containing protein -
  LZG54_RS11995 (LZG54_12010) - 2492989..2493324 (+) 336 WP_234114072.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83821.14 Da        Isoelectric Point: 8.9334

>NTDB_id=641887 LZG54_RS11970 WP_234114068.1 2486110..2488332(+) (priA) [Acinetobacter towneri strain SCLZS30]
MPDSTLDPQPVYRIRVAVPVYLYDCFDYMLSAAQYQQAKVGARVLVSFGRQNLVGIIVEKLALDTPIDPRFKLKAISELL
DEQAILDPKVLTLLTWSAQYYQFPIGEVMQSALPSLLRQAKPYNLLARTWKLLDAHAEVKITRSEKQQEAYKILKLHPSG
TSENILNLAGIETATLKALANKEICACVLEAQDFSPMPVTLAQMPLTPNPDQKKAIDTVLKVRQQYKAFLLDGLTGSGKT
EVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPVILGSATPSIDSYALVDQGKMQCLELNQRAGTALMPKIHL
IDLKIAKKQHGISQQLIDEIKKRLAKKEQVLVFLNRRGYAPVLICESCAWQAKCPNCDANFTLHHQPYTHLHCHHCGTIH
RKPEQCPACNHAELKPIGMGTAKVEDSLNELFPNVDVIRVDRDSTSRVGSWQKIYDRIQRSEPLILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQSVRPDHPLLTTLVEGDYRKFAKQSLKERKAAQL
PPYRYSALIRCESKSQELNQQFLQQHAQWLREHSEQLIEIWGPIPAPMERKAGRFHAHMVLLSKDRARLHFYIRNWWQNM
LHEKPSSMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=641887 LZG54_RS11970 WP_234114068.1 2486110..2488332(+) (priA) [Acinetobacter towneri strain SCLZS30]
ATGCCAGATTCCACTTTAGACCCACAGCCTGTTTATCGTATTCGAGTGGCTGTACCCGTATATCTTTACGACTGCTTCGA
TTATATGCTCAGTGCAGCACAATATCAGCAAGCAAAAGTGGGCGCGCGGGTCTTGGTTTCTTTTGGTCGGCAAAACTTGG
TCGGAATTATTGTCGAAAAACTGGCACTCGACACCCCAATTGATCCACGTTTTAAACTCAAAGCCATTAGCGAACTGTTA
GATGAGCAAGCGATTTTAGACCCTAAAGTTTTAACTTTGTTGACATGGTCGGCACAATATTATCAATTCCCGATTGGTGA
AGTGATGCAAAGTGCCTTACCTAGCTTATTGCGCCAAGCCAAACCCTATAATTTATTGGCACGTACTTGGAAATTGTTGG
ATGCACATGCCGAAGTCAAAATTACACGCTCAGAAAAACAACAAGAAGCCTATAAAATTTTAAAGCTGCATCCTTCGGGA
ACTTCTGAAAATATTTTAAATTTGGCAGGCATTGAAACAGCAACCCTAAAAGCCTTGGCGAATAAAGAAATTTGCGCATG
TGTTTTGGAAGCCCAAGATTTTAGCCCAATGCCAGTGACTTTGGCGCAAATGCCTTTAACCCCTAATCCAGATCAGAAAA
AAGCCATCGACACTGTACTTAAAGTACGGCAGCAATATAAGGCATTTTTACTGGATGGTTTAACGGGTAGCGGTAAAACT
GAAGTGTACTTACACATCATGCATGAGGTACTAAAACAGGGCAAACAAGTGTTGGTGTTAGTACCTGAAATTGGTCTAAC
GCCACAAACCATTAGCCGTTTCCAATCGCGTTTTCACTGCCACATCGCCCTCTTACATTCAGGTTTAAATGATTCCAAGC
GTTTGCAGGCGTGGCAAGCCGCACAAACGGGCAAAGCCTCGATTATTTTAGGTACACGTTCTGCGATTTATACCCCATTG
CCAAATTTAGGCTTGATTATTTTAGATGAAGAACACGACCTGTCTTTTAAACAGCAGGAAGGTTTTCGCTACCATGCCCG
TGATGTTGCGCTCTATCGTGCCCATCTGGAAAATTGCCCTGTTATTTTAGGTTCGGCAACTCCAAGCATTGACAGCTATG
CCTTAGTCGATCAAGGCAAAATGCAATGTCTGGAATTAAATCAACGCGCGGGCACGGCACTCATGCCCAAAATCCACCTG
ATTGATTTAAAAATTGCCAAAAAACAGCACGGTATTAGCCAACAATTGATTGATGAAATCAAAAAACGCTTGGCTAAAAA
AGAACAAGTTTTGGTGTTTTTAAACCGACGCGGCTATGCACCCGTATTGATTTGTGAGAGCTGTGCATGGCAAGCCAAAT
GCCCGAATTGTGATGCCAACTTTACCTTGCATCATCAACCTTATACACATTTGCATTGCCACCACTGCGGTACGATTCAT
CGTAAACCTGAGCAATGCCCTGCCTGCAACCATGCAGAACTCAAACCAATTGGCATGGGCACTGCCAAAGTCGAAGACAG
TTTAAACGAGCTGTTTCCCAATGTAGATGTGATTCGGGTAGATCGTGACTCAACCAGTCGTGTTGGCAGTTGGCAAAAAA
TTTATGACCGTATTCAACGCAGCGAACCACTGATTTTATTGGGCACGCAAATGCTGGCCAAAGGGCATCATTTTCCGTAT
GTGACATTGGTGGCAATTTTAGATATTGATTCAGGCTTACTTAGTGTGGATATTCGCGCACCTGAACGCACGGCTCAACT
GATTGTGCAAGTGGCGGGACGTGCAGGGCGCGGTGAGCATAAAGGTGATGTTTATTTGCAAAGTGTGCGTCCTGATCATC
CACTTCTCACCACATTGGTCGAGGGAGATTACCGCAAGTTCGCCAAACAAAGTTTAAAAGAACGCAAAGCTGCACAATTA
CCGCCTTATCGTTACAGTGCTTTGATTCGCTGTGAATCTAAAAGTCAGGAATTAAACCAGCAATTTTTACAACAACATGC
ACAATGGCTTAGAGAACATTCAGAACAATTAATTGAAATTTGGGGGCCGATTCCTGCGCCAATGGAACGTAAAGCAGGAC
GTTTCCATGCACACATGGTGTTGTTGTCTAAAGATCGGGCACGCTTACATTTTTATATCAGGAACTGGTGGCAAAATATG
TTGCATGAAAAGCCATCCAGCATGAAACTAAGTTTAGATATAGATCCGCAAGAATTTAGCTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.279

100

0.734