Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LZG54_RS11525 Genome accession   NZ_CP090382
Coordinates   2395990..2396847 (-) Length   285 a.a.
NCBI ID   WP_234115025.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2390990..2401847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS11510 (LZG54_11525) miaB 2392607..2394061 (+) 1455 WP_004976194.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LZG54_RS11515 (LZG54_11530) - 2394101..2395174 (+) 1074 WP_070155261.1 PhoH family protein -
  LZG54_RS11520 (LZG54_11535) ybeY 2395219..2395701 (+) 483 WP_234114021.1 rRNA maturation RNase YbeY -
  LZG54_RS11525 (LZG54_11540) tonB2 2395990..2396847 (-) 858 WP_234115025.1 energy transducer TonB Machinery gene
  LZG54_RS11530 (LZG54_11545) - 2397122..2397796 (+) 675 WP_234114022.1 hypothetical protein -
  LZG54_RS11535 (LZG54_11550) - 2397942..2398655 (+) 714 WP_234114023.1 DUF3108 domain-containing protein -
  LZG54_RS11540 (LZG54_11555) - 2398784..2399359 (+) 576 WP_004976172.1 xanthine phosphoribosyltransferase -
  LZG54_RS11545 (LZG54_11560) - 2399622..2400020 (+) 399 WP_178318596.1 hypothetical protein -
  LZG54_RS11550 (LZG54_11565) - 2400086..2400277 (-) 192 WP_234114024.1 hypothetical protein -
  LZG54_RS11555 (LZG54_11570) wrbA 2400564..2401160 (-) 597 WP_026438329.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32223.55 Da        Isoelectric Point: 6.2940

>NTDB_id=641886 LZG54_RS11525 WP_234115025.1 2395990..2396847(-) (tonB2) [Acinetobacter towneri strain SCLZS30]
MPSTQDWWKDPIFAAALLVAAVLHALILAVQFVAPQQSDAAVKEIAVSVRMSDAKVEDADFLAQADQQGSGTFREEHRMS
SDMPAPMTEQSAGEQQLESLERMQQQRELNFEEKVLMTTLSWQKQAAENQRKKAMQELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDNTAGYMEKFRQKVEFYGNRYYPEQAKAQNLAGEVRLMVVLNNNGGIRAIRLIESSGHAML
DEAAKASVRKAAPFGAFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=641886 LZG54_RS11525 WP_234115025.1 2395990..2396847(-) (tonB2) [Acinetobacter towneri strain SCLZS30]
ATGCCTTCTACGCAAGATTGGTGGAAAGATCCTATTTTTGCTGCAGCGTTGCTGGTGGCTGCTGTATTGCACGCATTAAT
TTTGGCCGTGCAGTTTGTTGCACCGCAACAAAGCGATGCTGCGGTCAAAGAGATTGCGGTATCGGTACGCATGAGCGATG
CAAAAGTTGAAGATGCAGATTTCTTAGCCCAAGCCGATCAGCAAGGTTCAGGTACGTTCCGTGAAGAACATCGCATGTCG
AGTGATATGCCTGCACCCATGACTGAACAAAGTGCAGGGGAGCAGCAATTGGAAAGTTTAGAGCGTATGCAGCAACAGCG
TGAATTAAACTTTGAAGAAAAAGTATTGATGACCACGCTCAGTTGGCAAAAACAGGCTGCAGAAAATCAGCGCAAAAAAG
CCATGCAGGAGTTGAATAGCCAATTCCAAGCTAAGGCTGCCATGGTCGCCAGTATTGAAGCGCAATATTTACAACGCCAA
CAAAATTTTAGCCGTCAGCAAAAAATTAAAACCATCGATGGGATTCAGGCCAAGCAAGACAACACCGCTGGTTATATGGA
AAAATTCCGTCAAAAAGTCGAATTTTATGGTAACCGTTATTATCCAGAACAAGCCAAAGCACAGAATTTGGCAGGCGAAG
TACGTTTAATGGTAGTTTTGAACAACAATGGTGGGATTCGTGCCATTCGTTTAATTGAAAGTTCAGGACATGCCATGCTA
GATGAAGCAGCCAAAGCTTCGGTGCGTAAAGCCGCACCTTTTGGTGCATTTGATGCCAAAATGAAAGATATTTCTGAATT
GCGGATTGTACGGACGTGGCGTTTTGACCCTGCTGAAGCTGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

71.326

97.895

0.698