Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LZG54_RS07465 Genome accession   NZ_CP090382
Coordinates   1563718..1564098 (-) Length   126 a.a.
NCBI ID   WP_234113617.1    Uniprot ID   -
Organism   Acinetobacter towneri strain SCLZS30     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1558718..1569098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZG54_RS07435 (LZG54_07450) tadA 1558897..1559424 (-) 528 WP_234113613.1 tRNA adenosine(34) deaminase TadA -
  LZG54_RS07440 (LZG54_07455) - 1559452..1560573 (-) 1122 WP_234113614.1 enoyl-CoA hydratase/isomerase family protein -
  LZG54_RS07445 (LZG54_07460) ung 1560570..1561283 (-) 714 WP_004976786.1 uracil-DNA glycosylase -
  LZG54_RS07450 (LZG54_07465) - 1561321..1561917 (-) 597 WP_104851897.1 6-pyruvoyl trahydropterin synthase family protein -
  LZG54_RS07455 (LZG54_07470) gspK 1562101..1563084 (-) 984 WP_234113615.1 type II secretion system minor pseudopilin GspK -
  LZG54_RS07460 (LZG54_07475) xcpW 1563098..1563721 (-) 624 WP_234113616.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LZG54_RS07465 (LZG54_07480) xcpV 1563718..1564098 (-) 381 WP_234113617.1 type II secretion system minor pseudopilin GspI Machinery gene
  LZG54_RS07470 (LZG54_07485) - 1564088..1564639 (-) 552 WP_178318413.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LZG54_RS07475 (LZG54_07490) - 1564646..1565260 (-) 615 WP_234113618.1 TetR/AcrR family transcriptional regulator -
  LZG54_RS07480 (LZG54_07495) - 1565356..1566129 (-) 774 WP_234113619.1 TatD family hydrolase -
  LZG54_RS07485 (LZG54_07500) - 1566154..1566495 (-) 342 WP_026438361.1 PilZ domain-containing protein -
  LZG54_RS07490 (LZG54_07505) - 1566506..1567495 (-) 990 WP_234113620.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  LZG54_RS07495 (LZG54_07510) kdsB 1567510..1568271 (-) 762 WP_004976805.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13972.98 Da        Isoelectric Point: 7.0095

>NTDB_id=641882 LZG54_RS07465 WP_234113617.1 1563718..1564098(-) (xcpV) [Acinetobacter towneri strain SCLZS30]
MKAKGFTLLEVMVALAIFATAAMAMTKVAMQYTQSTANAILRTNAQFVALNEVALMEMNRQWLSGTESKQVTQQGETWQI
DKSTQPTISPNVQRVHLQISLYNQDTGQVEAGVTSLVFFNAREQQS

Nucleotide


Download         Length: 381 bp        

>NTDB_id=641882 LZG54_RS07465 WP_234113617.1 1563718..1564098(-) (xcpV) [Acinetobacter towneri strain SCLZS30]
ATGAAAGCTAAAGGATTTACACTACTTGAAGTTATGGTGGCTTTGGCAATTTTTGCAACAGCAGCTATGGCAATGACCAA
AGTGGCGATGCAATATACCCAATCCACCGCCAATGCAATTTTAAGAACCAATGCACAATTTGTGGCTTTGAATGAAGTGG
CATTGATGGAAATGAATCGTCAATGGTTAAGTGGGACAGAGTCAAAGCAAGTGACACAACAGGGCGAAACATGGCAAATT
GACAAGTCCACACAACCAACCATTAGTCCGAATGTGCAACGTGTTCATCTTCAAATCAGTTTATATAATCAAGACACAGG
ACAAGTTGAAGCAGGAGTGACTTCTTTGGTGTTTTTTAATGCCCGTGAGCAGCAATCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.833

95.238

0.722