Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   U722_RS06935 Genome accession   NC_023073
Coordinates   1389196..1389660 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens LFB112     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1384196..1394660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U722_RS06920 (U722_07330) - 1384676..1386496 (+) 1821 WP_015417363.1 PAS domain-containing protein -
  U722_RS06925 (U722_07335) - 1386472..1387691 (-) 1220 Protein_1335 aminotransferase A -
  U722_RS20015 (U722_07340) - 1387892..1388053 (-) 162 WP_007409608.1 hypothetical protein -
  U722_RS06930 (U722_07345) cheV 1388242..1389153 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  U722_RS06935 (U722_07350) kre 1389196..1389660 (-) 465 WP_003154622.1 YkyB family protein Regulator
  U722_RS06940 (U722_07355) - 1389783..1391075 (-) 1293 WP_024085236.1 MFS transporter -
  U722_RS06945 (U722_07360) - 1391151..1391645 (-) 495 WP_088037173.1 L,D-transpeptidase family protein -
  U722_RS06950 (U722_07365) - 1391720..1392583 (-) 864 WP_024085238.1 metallophosphoesterase -
  U722_RS06955 (U722_07370) fadH 1392727..1393491 (+) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  U722_RS20225 (U722_07375) - 1393601..1394146 (+) 546 Protein_1343 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=64187 U722_RS06935 WP_003154622.1 1389196..1389660(-) (kre) [Bacillus amyloliquefaciens LFB112]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=64187 U722_RS06935 WP_003154622.1 1389196..1389660(-) (kre) [Bacillus amyloliquefaciens LFB112]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment