Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LYZ39_RS11255 Genome accession   NZ_CP090381
Coordinates   2405401..2406762 (+) Length   453 a.a.
NCBI ID   WP_171665186.1    Uniprot ID   -
Organism   Achromobacter deleyi strain SMAs-55     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2400401..2411762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ39_RS11235 (LYZ39_11235) hpaE 2401400..2402866 (+) 1467 WP_171665190.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -
  LYZ39_RS11240 (LYZ39_11240) hpaD 2402905..2403756 (+) 852 WP_171665189.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  LYZ39_RS11245 (LYZ39_11245) hpaR 2403757..2404221 (-) 465 WP_171665188.1 homoprotocatechuate degradation operon regulator HpaR -
  LYZ39_RS11250 (LYZ39_11250) - 2404341..2404973 (-) 633 WP_171665187.1 hypothetical protein -
  LYZ39_RS11255 (LYZ39_11255) radA 2405401..2406762 (+) 1362 WP_171665186.1 DNA repair protein RadA Machinery gene
  LYZ39_RS11260 (LYZ39_11260) - 2406861..2407640 (+) 780 WP_171665185.1 sulfite exporter TauE/SafE family protein -
  LYZ39_RS11265 (LYZ39_11265) - 2407819..2408055 (+) 237 WP_171665184.1 hypothetical protein -
  LYZ39_RS11270 (LYZ39_11270) - 2408207..2409163 (-) 957 WP_171665183.1 2-hydroxyacid dehydrogenase -
  LYZ39_RS11275 (LYZ39_11275) - 2409258..2410229 (-) 972 WP_171665182.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  LYZ39_RS11280 (LYZ39_11280) - 2410304..2411305 (-) 1002 WP_171665181.1 Bug family tripartite tricarboxylate transporter substrate binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48167.18 Da        Isoelectric Point: 6.9552

>NTDB_id=641849 LYZ39_RS11255 WP_171665186.1 2405401..2406762(+) (radA) [Achromobacter deleyi strain SMAs-55]
MAKSRTVYVCADCGGTTPKWQGKCPHCNAWNTLEETVESSTPAAAAHRYAPLASTSPVRSLSEIEARETPRQPTGLEEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSETSNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLEAIQSA
VSEQKPTVAVIDSIQTLYSGELSAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGSLAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDGALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=641849 LYZ39_RS11255 WP_171665186.1 2405401..2406762(+) (radA) [Achromobacter deleyi strain SMAs-55]
ATGGCCAAATCCCGAACCGTATACGTGTGCGCCGACTGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACCCTTGAAGAAACGGTGGAGTCGTCGACGCCCGCCGCGGCTGCCCACCGTTATGCGCCGCTGGCTT
CCACCAGCCCGGTGCGCAGCCTGTCCGAGATCGAAGCCCGCGAAACCCCGCGCCAGCCCACCGGACTGGAAGAGTTCGAT
CGCGTGCTGGGCGGCGGCCTGGTGGCCGGCGCCGTGGTGCTGATCGGCGGAGATCCGGGCATCGGCAAGTCGACGCTGCT
GCTGCAGGCGCTGGCTTCGTTGTCCGAAACCTCCAACGTGCTGTATGTGACCGGCGAGGAATCCGCTGAACAGGTGGCGC
TGCGCGCGCGCCGGCTCGGATTGCAGACGGGCAATGTCAATCTGCTGGCCGAGATCCGGCTGGAAGCCATCCAGTCCGCC
GTGTCCGAGCAAAAGCCGACAGTCGCGGTGATCGACTCCATCCAGACCCTCTACAGCGGCGAGCTCAGCGCCGCGCCGGG
CTCGGTGTCGCAGGTGCGCGAATGCGCGGCGCAACTGACACGCCTGGCCAAGCAGACCGGCATCGCCATCGTCATGATCG
GCCACGTTACGAAGGACGGTTCGCTGGCCGGTCCGCGCGTGCTGGAGCACATCGTGGACACGGTGCTGTACTTCGAAGGC
GACACGCATTCGTCGTTTCGGCTGGTGCGCGCCTTCAAGAACCGTTTCGGCGCGGTCAATGAACTCGGCGTCTTCGCCAT
GACGGACCGCGGCCTGCGCGGCGTGGCCAACCCGTCCGCATTGTTCCTGTCGCAACATGAACAGCAGGTGGCTGGCTCGT
GCGTGATGGCCACGCAAGAGGGCACGCGTCCGCTGCTGGTGGAGATCCAGGCGCTGGTGGACAGTTCCCATGCGCCCAAT
CCGCGCCGGCTGACGGTCGGGCTGGAGGGCAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGGCACGCGGGCGTGTC
CACGTTCGACCAGGACGTCTTCGTCAATGCGGTGGGGGGCGTGCGCATCACGGAACCCGCGGCGGACTTGCCGGTGCTGC
TGGCCATCATGTCCTCGCTGCGCGACAAGCCTTTGCCGCGCGGCCTGATCGCGTTCGGCGAAGTGGGCCTGGCCGGCGAG
ATCCGGCCCGCGCCGCGTGGCCAGGAGCGCCTGCGCGAAGCCGCCAAGCTGGGATTCTCGATCGCCTTGATCCCCAAGGC
CAATGCGCCACGCCAGCCCATCGAGGGACTGGAGATCTGGGCCGTGGACCGCCTGGACGGGGCACTGGACAAGCTGCGCT
GA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.501

95.585

0.492
  radA Streptococcus pneumoniae Rx1

48.826

94.04

0.459
  radA Streptococcus pneumoniae D39

48.826

94.04

0.459
  radA Streptococcus pneumoniae R6

48.826

94.04

0.459
  radA Streptococcus pneumoniae TIGR4

48.826

94.04

0.459
  radA Streptococcus mitis NCTC 12261

48.826

94.04

0.459
  radA Streptococcus mitis SK321

48.826

94.04

0.459