Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZF87_RS02545 Genome accession   NZ_CP090376
Coordinates   559543..560904 (+) Length   453 a.a.
NCBI ID   WP_244341370.1    Uniprot ID   -
Organism   Flavobacterium enshiense strain R6S-5-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 554543..565904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZF87_RS02520 (LZF87_02520) - 555138..555944 (-) 807 WP_244341360.1 glycogen/starch synthase -
  LZF87_RS02525 (LZF87_02525) panC 556053..556901 (+) 849 WP_244341362.1 pantoate--beta-alanine ligase -
  LZF87_RS02530 (LZF87_02530) panD 556916..557266 (+) 351 WP_023573119.1 aspartate 1-decarboxylase -
  LZF87_RS02535 (LZF87_02535) - 557268..558230 (+) 963 WP_244341365.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LZF87_RS02540 (LZF87_02540) - 558278..559540 (+) 1263 WP_244341368.1 alpha/beta hydrolase-fold protein -
  LZF87_RS02545 (LZF87_02545) radA 559543..560904 (+) 1362 WP_244341370.1 DNA repair protein RadA Machinery gene
  LZF87_RS02550 (LZF87_02550) - 560956..561420 (+) 465 WP_244341372.1 gliding motility lipoprotein GldH -
  LZF87_RS02555 (LZF87_02555) serS 561485..562756 (-) 1272 WP_244341378.1 serine--tRNA ligase -
  LZF87_RS02560 (LZF87_02560) - 562920..564830 (+) 1911 WP_244341385.1 M1 family aminopeptidase -
  LZF87_RS02565 (LZF87_02565) - 564877..565152 (+) 276 WP_244341387.1 T9SS type A sorting domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49930.47 Da        Isoelectric Point: 5.9833

>NTDB_id=641840 LZF87_RS02545 WP_244341370.1 559543..560904(+) (radA) [Flavobacterium enshiense strain R6S-5-6]
MSKIKTAFFCQSCGTQFAKWQGQCTSCKAWNTIVEEVIHKEEKVAWKTETSPVKKAAKPLKIKEIDSVEEIRLNTTDGEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITANSDNCYILTETKTQNIFRQI
EEIEPEIVIIDSIQTLHTDYIESSPGSISQIRETTAELIKFAKETNTPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGSGLREVANPSEILISHKDEELSGTAIASTLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFHLGSKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVEKNFCFAGEVGLSGEI
RPVNRVEQRIQEAEKLGFSTIFVSKYNKISLKNTLIEIKMVAKVEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=641840 LZF87_RS02545 WP_244341370.1 559543..560904(+) (radA) [Flavobacterium enshiense strain R6S-5-6]
ATGTCGAAAATAAAAACCGCCTTTTTCTGCCAGAGCTGCGGCACCCAGTTTGCCAAATGGCAAGGACAGTGCACATCCTG
TAAGGCATGGAATACCATTGTAGAAGAAGTCATTCACAAAGAAGAAAAAGTAGCTTGGAAGACAGAAACTTCTCCAGTCA
AAAAAGCCGCTAAACCTTTAAAAATAAAAGAAATTGATTCTGTCGAAGAAATTCGGTTAAACACTACAGACGGAGAGTTA
AACCGAGTTTTGGGCGGCGGAATCGTTCCGGGCTCCTTAACCCTTTTAGGTGGCGAACCCGGAATTGGAAAGAGTACGCT
CCTTTTGCAAATCTCTTTGAAATTACCCTATAAAACCCTCTATGTCTCTGGGGAAGAAAGTCAGAAGCAGATAAAAATGC
GCGCCGAAAGGATTACAGCCAACAGCGATAACTGTTATATCCTGACCGAAACCAAAACTCAGAATATATTTCGTCAGATT
GAAGAAATCGAACCGGAAATCGTGATTATCGACTCCATTCAGACACTTCATACCGATTACATCGAATCGTCTCCCGGAAG
CATATCTCAAATCAGGGAAACCACGGCAGAACTGATAAAATTCGCCAAGGAAACCAATACTCCGGTTATCCTTATCGGAC
ATATTACAAAGGATGGTAACATTGCCGGTCCGAAGATTCTGGAGCACATGGTAGATACCGTTTTACAATTTGAAGGCGAC
CGAAATCATGTTTACCGCATTTTACGATCGCTTAAAAACCGTTTTGGATCCACCGCCGAACTGGGCATTTATGAAATGCT
TGGCTCCGGATTGCGCGAAGTAGCCAATCCGTCGGAGATTTTGATTTCCCATAAAGACGAGGAACTTTCGGGTACTGCCA
TTGCCTCTACATTAGAAGGTATGCGACCGCTAATGATTGAAATACAGGCCTTAGTTTCCACCGCTGTCTACGGAACGCCA
CAACGCAGCACCACCGGTTACAACGCCAAGCGACTCAACATGATTTTAGCAGTACTGGAAAAACGCGCCGGTTTTCATTT
GGGTTCCAAAGATGTGTTCTTAAATGTTACAGGAGGAATTTCCGTGGACGATCCGGCTATTGATTTGGCGGTTGTAGCAG
CGATACTCTCATCCAACGAAGATATTCCGGTGGAAAAAAACTTTTGTTTTGCAGGCGAAGTAGGACTTTCGGGAGAAATC
CGTCCGGTAAACCGTGTAGAACAACGCATACAAGAGGCCGAAAAATTAGGTTTTTCGACCATTTTCGTTTCCAAATACAA
TAAAATATCACTAAAAAATACGCTTATCGAAATAAAAATGGTGGCGAAGGTTGAAGATGTCGTTTCGGAATTATTTGGAT
AG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Subunit ChlI of Mg-chelatase (ChlI)

(315-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

48.904

100

0.492
  radA Streptococcus pneumoniae TIGR4

48.904

100

0.492
  radA Streptococcus mitis NCTC 12261

48.904

100

0.492
  radA Streptococcus pneumoniae Rx1

48.904

100

0.492
  radA Streptococcus pneumoniae R6

48.904

100

0.492
  radA Streptococcus mitis SK321

48.571

100

0.488
  radA Bacillus subtilis subsp. subtilis str. 168

50.93

94.923

0.483