Detailed information NTG0641828

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM38_RS09930
• Genome accession: NZ_CP107164
• Coordinates: 1973567..1974559 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1968567..1979559

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM38_RS09910 (OGM38_09900)	ygbM	1969205..1969981 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM38_RS09915 (OGM38_09905)	ygbN	1970070..1971434 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM38_RS09920 (OGM38_09910)	-	1971577..1972620 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM38_RS09925 (OGM38_09915)	-	1972845..1973396 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM38_RS09930 (OGM38_09920)	rpoS	1973567..1974559 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM38_RS09935 (OGM38_09925)	nlpD	1974622..1975716 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM38_RS09940 (OGM38_09930)	pcm	1975901..1976527 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM38_RS09945 (OGM38_09935)	surE	1976521..1977282 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM38_RS09950 (OGM38_09940)	truD	1977263..1978312 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM38_RS09955 (OGM38_09945)	ispF	1978309..1978788 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM38_RS09960 (OGM38_09950)	ispD	1978788..1979498 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641828 OGM38_RS09930 WP_000081550.1 1973567..1974559(-) (rpoS) [Escherichia coli strain R9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641828 OGM38_RS09930 WP_000081550.1 1973567..1974559(-) (rpoS) [Escherichia coli strain R9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715