Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LYZ41_RS12300 Genome accession   NZ_CP090369
Coordinates   2651716..2653062 (-) Length   448 a.a.
NCBI ID   WP_059156859.1    Uniprot ID   A0AAP1BUG8
Organism   Elizabethkingia miricola strain Mir-N11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2646716..2658062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ41_RS12275 (LYZ41_12275) - 2647004..2647990 (-) 987 WP_086980530.1 NAD-dependent epimerase/dehydratase family protein -
  LYZ41_RS12280 (LYZ41_12280) - 2647987..2648820 (-) 834 WP_086980529.1 SDR family oxidoreductase -
  LYZ41_RS12285 (LYZ41_12285) - 2649147..2649851 (-) 705 WP_086980528.1 VanW family protein -
  LYZ41_RS12290 (LYZ41_12290) - 2649858..2650538 (-) 681 WP_086980527.1 class I SAM-dependent methyltransferase -
  LYZ41_RS12295 (LYZ41_12295) - 2650541..2651695 (-) 1155 WP_086980526.1 AraC family transcriptional regulator -
  LYZ41_RS12300 (LYZ41_12300) radA 2651716..2653062 (-) 1347 WP_059156859.1 DNA repair protein RadA Machinery gene
  LYZ41_RS12305 (LYZ41_12305) - 2653279..2654898 (+) 1620 WP_059156860.1 CTP synthase -
  LYZ41_RS12310 (LYZ41_12310) yidC 2654907..2656688 (+) 1782 WP_059343612.1 membrane protein insertase YidC -
  LYZ41_RS12315 (LYZ41_12315) - 2656748..2656885 (-) 138 WP_059330226.1 hypothetical protein -
  LYZ41_RS12320 (LYZ41_12320) - 2656957..2657526 (-) 570 WP_099512889.1 ribonuclease HII -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49829.33 Da        Isoelectric Point: 6.7597

>NTDB_id=641776 LYZ41_RS12300 WP_059156859.1 2651716..2653062(-) (radA) [Elizabethkingia miricola strain Mir-N11]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEIIEKSTSKNYSGEKKQHIINIIEVNAQEEPRIATPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=641776 LYZ41_RS12300 WP_059156859.1 2651716..2653062(-) (radA) [Elizabethkingia miricola strain Mir-N11]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAATTATTGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAACAACATA
TCATTAACATTATTGAGGTCAACGCTCAGGAAGAACCAAGAATTGCAACTCCGAGCGACGAACTGAATCGTGTATTGGGA
GGTGGAATTGTACTGGGTTCTGTTACCTTAATTGGTGGTGAACCGGGCATCGGAAAATCTACCCTTTTGCTTCAGCTGGC
ACTGAAAATGCGCAAGCGTGTTTTGTATGTCTCCGGAGAAGAAAGTGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CCGATCTTCAAAATCCGGAGTGCTTCCTTTTTACAGAAACTTCTGTGGACAAAATTCTGCATGAAGCGAAAAAGCTGCAG
CCTCAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGCCTTATAGAAAGTTCACCGGGAACAGTTTCTCAGAT
TCGGGAATGTTCCTCAGAAATTATAAAGTTTGCCAAAGAAACCAATACCCCAGTATTTCTGGTAGGTCATATCACCAAAG
ACGGACAAATTGCCGGTCCGAAAGTACTGGAACATATGGTAGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGATTACTAAGAGCTAATAAAAACCGTTTTGGCTCTACTTCCGAAATTGGTATTTATGAAATGATATCTCAGGGCCT
GAAAGAAATTAAAAATCCTTCTGAAATTCTGATTACCAAAAAATTTGAAGAACTATCCGGTAACTCGGTAGCCGTAACCC
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACTGCTGTTTATGGTACTCCACAGAGAAGCTGC
ACTGGTTTCGATGCAAAAAGACTGAATATGCTTCTGGCAGTATTGGAGAAACGCGCAGGCTTCCAACTTGGATCGAAAGA
CGTGTTCCTTAATATAACCGGTGGTATTAAAACAGATGATCCCGCACTGGATTTAGCTGTTGTAGCCTCTATCCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTTGCAGGAGAAATAGGTCTTAGTGGAGAAATACGGCCTGTTCCC
CAGATTGAACACCGGATCACAGAAGCCGAAAAGCTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGTAAAATCGAAGATTTCCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.359

100

0.493
  radA Streptococcus pneumoniae Rx1

48.359

100

0.493
  radA Streptococcus pneumoniae D39

48.359

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.359

100

0.493
  radA Streptococcus mitis NCTC 12261

48.352

100

0.491
  radA Streptococcus mitis SK321

48.132

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473