Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | LY257_RS00280 | Genome accession | NZ_CP090367 |
| Coordinates | 62275..62850 (+) | Length | 191 a.a. |
| NCBI ID | WP_001203606.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain CCUG 17875 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57275..67850
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY257_RS00255 (LY257_00255) | uvrD | 57966..60011 (+) | 2046 | WP_001864185.1 | DNA helicase UvrD | - |
| LY257_RS00260 (LY257_00260) | flgA | 60008..60664 (+) | 657 | WP_000697659.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| LY257_RS00265 (LY257_00265) | - | 60674..61237 (+) | 564 | WP_000780095.1 | UbiX family flavin prenyltransferase | - |
| LY257_RS00270 (LY257_00270) | coaD | 61237..61710 (+) | 474 | WP_001169242.1 | pantetheine-phosphate adenylyltransferase | - |
| LY257_RS00275 (LY257_00275) | tmk | 61712..62287 (+) | 576 | WP_000289724.1 | dTMP kinase | - |
| LY257_RS00280 (LY257_00280) | comFC | 62275..62850 (+) | 576 | WP_001203606.1 | ComF family protein | Machinery gene |
| LY257_RS00285 (LY257_00285) | - | 62884..64920 (+) | 2037 | WP_001039920.1 | N-6 DNA methylase | - |
| LY257_RS00290 (LY257_00290) | - | 64917..66179 (+) | 1263 | WP_000580112.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21391.92 Da Isoelectric Point: 8.6728
>NTDB_id=641748 LY257_RS00280 WP_001203606.1 62275..62850(+) (comFC) [Helicobacter pylori strain CCUG 17875]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=641748 LY257_RS00280 WP_001203606.1 62275..62850(+) (comFC) [Helicobacter pylori strain CCUG 17875]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGTGCTGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCTAACAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGTGCTGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |