Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   LY257_RS00010 Genome accession   NZ_CP090367
Coordinates   1588..3027 (+) Length   479 a.a.
NCBI ID   WP_000748989.1    Uniprot ID   -
Organism   Helicobacter pylori strain CCUG 17875     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY257_RS00005 (LY257_00005) dnaA 1..1368 (+) 1368 WP_054833634.1 chromosomal replication initiator protein DnaA -
  LY257_RS00010 (LY257_00010) comH 1588..3027 (+) 1440 WP_000748989.1 hypothetical protein Machinery gene
  LY257_RS00020 (LY257_00020) - 3206..3958 (+) 753 WP_000767550.1 exodeoxyribonuclease III -
  LY257_RS00025 (LY257_00025) - 3955..4590 (-) 636 WP_000668065.1 outer membrane protein -
  LY257_RS00030 (LY257_00030) - 4594..4947 (-) 354 WP_000837019.1 hypothetical protein -
  LY257_RS00035 (LY257_00035) recG 5029..6900 (+) 1872 WP_001158353.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54906.81 Da        Isoelectric Point: 6.5953

>NTDB_id=641747 LY257_RS00010 WP_000748989.1 1588..3027(+) (comH) [Helicobacter pylori strain CCUG 17875]
MKKSLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEVHPHQMPSLNAPMQKPQNKPNSSQQSPQNFSYPESKLGSKNSKNSLLQPL
AIPSKINPTNEVKTPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNDTSNADINENNESNENRDNVEKQAVRDANVKEFA
CGKWVYDDENLQAYRPSILKRVDEDRQTATDITPCDYSTAENKSGKIITPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQVEPTFYETSELAYSSTRKSEITQNEL
NLNEKFMEFVEVYEGHYLNDIIKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=641747 LY257_RS00010 WP_000748989.1 1588..3027(+) (comH) [Helicobacter pylori strain CCUG 17875]
ATGAAAAAATCCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
GATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACTCTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAGATTGTTTTTTCTTCAAAAGA
ATTAAAAGAAGTGCACCCGCACCAAATGCCTTCTTTAAACGCGCCCATGCAAAAACCACAAAACAAGCCCAACTCATCGC
AACAATCTCCTCAAAACTTTTCTTACCCAGAGTCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTA
GCAATTCCTAGCAAAATAAACCCCACTAACGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACGCCACCCACCGAAAAAACGCTCCCTAACGACACCTCTAACGCTGATATTA
ATGAAAACAATGAAAGCAACGAAAATAGGGACAATGTGGAAAAACAAGCCGTTAGAGATGCTAATGTTAAAGAATTTGCA
TGCGGGAAGTGGGTTTATGACGATGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAGACA
GACTGCGACAGACATCACCCCTTGCGATTACAGCACCGCTGAAAATAAAAGCGGTAAAATCATTACCCCTTATACTAAAA
TCTCCGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACGATTCTTCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCAAGAAAAGACGGCACGACTAGGCAATGCTATCTAATAGAAGAGCCTTT
AAAACAAGCATGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCGTATATGAGCGCCCCAAACAAGACGATC
AAGTAGAGCCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCAAAACGAATTG
AATTTGAATGAAAAATTCATGGAATTTGTGGAAGTGTATGAAGGGCATTATTTAAACGATATAATCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTGGTGTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

95.825

100

0.958