Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OGM39_RS05945 Genome accession   NZ_CP107162
Coordinates   1235994..1236599 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain R10     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230994..1241599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM39_RS05915 (OGM39_05910) rsmS 1231696..1231860 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  OGM39_RS05920 (OGM39_05915) priC 1231874..1232401 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  OGM39_RS05925 (OGM39_05920) ybaN 1232471..1232848 (+) 378 WP_001188900.1 DUF454 family protein -
  OGM39_RS05930 (OGM39_05925) apt 1233001..1233552 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  OGM39_RS05935 (OGM39_05930) dnaX 1233681..1235612 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  OGM39_RS05940 (OGM39_05935) ybaB 1235665..1235994 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  OGM39_RS05945 (OGM39_05940) recR 1235994..1236599 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  OGM39_RS05950 (OGM39_05945) htpG 1236709..1238583 (+) 1875 WP_029700694.1 molecular chaperone HtpG -
  OGM39_RS05955 (OGM39_05950) adk 1238764..1239408 (+) 645 WP_001220233.1 adenylate kinase -
  OGM39_RS05960 (OGM39_05955) hemH 1239540..1240502 (+) 963 WP_001250114.1 ferrochelatase -
  OGM39_RS05965 (OGM39_05960) aes 1240499..1241458 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=641739 OGM39_RS05945 WP_001195025.1 1235994..1236599(+) (recR) [Escherichia coli strain R10]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=641739 OGM39_RS05945 WP_001195025.1 1235994..1236599(+) (recR) [Escherichia coli strain R10]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443