Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LW136_RS17575 Genome accession   NZ_CP090366
Coordinates   3695864..3697225 (+) Length   453 a.a.
NCBI ID   WP_230355937.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3690864..3702225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS17555 (LW136_17555) - 3693277..3694305 (+) 1029 WP_038657144.1 cytochrome-c peroxidase -
  LW136_RS17560 (LW136_17560) mscL 3694352..3694762 (-) 411 WP_038657142.1 large-conductance mechanosensitive channel protein MscL -
  LW136_RS17565 (LW136_17565) - 3694986..3695255 (+) 270 WP_003281602.1 YdcH family protein -
  LW136_RS17570 (LW136_17570) - 3695313..3695747 (-) 435 WP_014821457.1 CopD family protein -
  LW136_RS17575 (LW136_17575) radA 3695864..3697225 (+) 1362 WP_230355937.1 DNA repair protein RadA Machinery gene
  LW136_RS17580 (LW136_17580) - 3697229..3697597 (-) 369 WP_041014893.1 PilZ domain-containing protein -
  LW136_RS17585 (LW136_17585) - 3697655..3698116 (-) 462 WP_042927725.1 methyltransferase family protein -
  LW136_RS17590 (LW136_17590) glyA 3698252..3699505 (-) 1254 WP_042927726.1 serine hydroxymethyltransferase -
  LW136_RS22790 - 3699721..3699855 (-) 135 WP_256449918.1 hypothetical protein -
  LW136_RS17595 (LW136_17595) - 3700169..3702145 (+) 1977 WP_234173269.1 type I restriction-modification system subunit M -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48493.99 Da        Isoelectric Point: 6.7490

>NTDB_id=641737 LW136_RS17575 WP_230355937.1 3695864..3697225(+) (radA) [Stutzerimonas kunmingensis strain 7850S]
MAKAKRMYGCTECGSTFPKWAGQCGDCGAWNTLVETIIEGAAPPSGRAGWAGEQANIRTLAEVSVEEVPRFSTASGELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCAIAQQYPALYVTGEESQQQVAMRARRLDLPQDRLKVMTETCIESIIATA
RLEKPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVTNPSAIFLTRAQEAVPGSVVMATWEGTRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGSIPTYDQDVFINVVGGVKVLETAADLALMAAVISSLRNRPLNTDLLVFGEVGLSGEI
RPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=641737 LW136_RS17575 WP_230355937.1 3695864..3697225(+) (radA) [Stutzerimonas kunmingensis strain 7850S]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAATGCGGCTCGACCTTCCCGAAATGGGCCGGCCAGTGCGGTGACTG
TGGCGCCTGGAATACGCTGGTGGAAACGATCATCGAGGGTGCGGCACCGCCATCCGGCCGCGCAGGCTGGGCCGGGGAGC
AGGCCAACATCAGGACGCTCGCCGAGGTCAGCGTCGAGGAAGTACCGCGCTTTTCCACCGCTTCCGGCGAGCTGGATCGC
GTACTCGGAGGGGGGCTGGTGGACGGCTCGGTAGTGCTGATCGGCGGTGATCCGGGTATCGGCAAGTCGACGATCCTGCT
GCAGACCCTCTGCGCCATCGCCCAGCAGTACCCGGCGCTCTACGTCACCGGTGAGGAATCCCAGCAGCAGGTCGCCATGC
GTGCGCGTCGTCTGGACCTGCCGCAGGACCGGCTCAAGGTGATGACCGAGACCTGCATCGAATCAATCATCGCCACCGCG
CGGCTGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGCTGCAGTCCGCGCCGGGCGG
TGTGGCTCAGGTGCGCGAGAGCGCGGCGCTGCTGGTCCGCTTCGCCAAGCAGAGCGGCACGGCGATCTTCCTCGTCGGCC
ACGTGACCAAGGAAGGCGCCCTCGCCGGGCCGCGTGTGCTCGAGCACATGGTCGATACGGTGCTGTATTTCGAGGGCGAG
TCCGACGGTCGCCTGCGCCTCTTGCGCGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGTGTGTTCGGCATGAC
CGACAAGGGTCTGAAAGAAGTCACCAACCCGTCGGCGATCTTCCTCACCCGCGCCCAGGAAGCGGTGCCGGGCAGCGTGG
TGATGGCTACCTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGATACCAGCCACCTGGCCAACCCG
CGCCGCGTCACCCTGGGCCTCGACCAGAACCGCCTGGCCATGCTGCTGGCCGTGCTGCATCGGCATGGCAGCATTCCCAC
CTACGATCAGGACGTGTTCATCAACGTGGTCGGCGGCGTGAAGGTGCTGGAGACCGCGGCGGATCTGGCGCTGATGGCCG
CGGTGATCTCCAGCCTGCGCAACCGGCCGCTGAATACCGATCTGCTGGTGTTCGGTGAAGTGGGCCTGTCGGGCGAGATC
CGCCCGGTGCCAAGTGGTCAGGAGCGTCTGAAGGAGGCCGCCAAGCACGGCTTCAAGCGCGCCATCGTGCCCAAGGGCAA
TGCGCCGAAGGAAGCCCCCGCCGGTTTGCAGATCATCGCCGTGACCCGCCTGGAGCAGGCGCTCGACGCGCTGTTCGAGT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-219)

Subunit ChlI of Mg-chelatase (ChlI)

(350-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.124

100

0.481
  radA Streptococcus pneumoniae Rx1

46.608

100

0.47
  radA Streptococcus pneumoniae D39

46.608

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.608

100

0.47
  radA Streptococcus pneumoniae R6

46.608

100

0.47
  radA Streptococcus mitis NCTC 12261

46.389

100

0.468
  radA Streptococcus mitis SK321

46.578

100

0.466