Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LW136_RS17425 Genome accession   NZ_CP090366
Coordinates   3666768..3667313 (+) Length   181 a.a.
NCBI ID   WP_230355912.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3661768..3672313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS17400 (LW136_17400) speA 3661795..3663708 (-) 1914 WP_230355904.1 arginine decarboxylase -
  LW136_RS17405 (LW136_17405) - 3663831..3664202 (-) 372 WP_230355907.1 translation initiation factor Sui1 -
  LW136_RS17410 (LW136_17410) thiO 3664351..3665460 (-) 1110 WP_230355909.1 glycine oxidase ThiO -
  LW136_RS17415 (LW136_17415) - 3665613..3666110 (+) 498 WP_230355911.1 GspH/FimT family pseudopilin -
  LW136_RS17420 (LW136_17420) - 3666268..3666759 (+) 492 WP_044315020.1 GspH/FimT family pseudopilin -
  LW136_RS17425 (LW136_17425) pilV 3666768..3667313 (+) 546 WP_230355912.1 type IV pilus modification protein PilV Machinery gene
  LW136_RS17430 (LW136_17430) - 3667310..3668161 (+) 852 WP_044315018.1 PilW family protein -
  LW136_RS17435 (LW136_17435) - 3668158..3668775 (+) 618 WP_230355914.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19754.55 Da        Isoelectric Point: 4.8417

>NTDB_id=641736 LW136_RS17425 WP_230355912.1 3666768..3667313(+) (pilV) [Stutzerimonas kunmingensis strain 7850S]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSAQRNTAIVLAGDLIEIVRAHPKELFNTSPPQFPMNSGLKG
SSIFYKDAGDDFADRESCVASPTRIAKTAKELRDCWADKVEALLPGGSELFDSDVYVCRSSIAGDCDNKGSMLEIRLAWR
VRECLDASNSDVCSYTVRVEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=641736 LW136_RS17425 WP_230355912.1 3666768..3667313(+) (pilV) [Stutzerimonas kunmingensis strain 7850S]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAGGTGTTGGTGGCCCTACTGCTAACCACCATCGGCGTACTCGGCATGGT
GGCTTTGCAGGGACGCAGTATCCAATACACGCAGGACTCGGCACAGCGCAACACTGCCATCGTCTTGGCCGGAGACCTCA
TCGAAATTGTAAGAGCGCACCCGAAAGAACTGTTCAACACCTCGCCGCCGCAATTTCCTATGAATAGCGGGTTAAAAGGC
AGTTCCATTTTCTATAAAGACGCCGGCGATGACTTCGCCGACCGCGAGAGCTGCGTGGCGAGTCCGACCCGAATTGCAAA
AACGGCAAAAGAATTGCGCGACTGCTGGGCGGACAAGGTTGAAGCATTATTACCAGGCGGCAGCGAGCTATTCGATAGCG
ACGTATACGTTTGCCGCAGCTCTATTGCAGGTGATTGCGATAACAAGGGTTCAATGCTTGAAATTCGCCTGGCCTGGCGA
GTTCGTGAATGCCTCGATGCAAGCAATTCCGATGTCTGCAGCTATACAGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.634

100

0.492