Detailed information NTG0641719

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM39_RS00275
• Genome accession: NZ_CP107162
• Coordinates: 46774..47799 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R10
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 41774..52799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM39_RS00245 (OGM39_00245)	zapB	41858..42103 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM39_RS00250 (OGM39_00250)	rraA	42188..42673 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM39_RS00255 (OGM39_00255)	menA	42766..43692 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM39_RS00260 (OGM39_00260)	hslU	43759..45090 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM39_RS00265 (OGM39_00265)	hslV	45100..45630 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM39_RS00270 (OGM39_00270)	ftsN	45723..46682 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM39_RS00275 (OGM39_00275)	cytR	46774..47799 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM39_RS00280 (OGM39_00280)	priA	47955..50153 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM39_RS00285 (OGM39_00285)	rpmE	50356..50568 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM39_RS00290 (OGM39_00290)	yiiX	50629..51237 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM39_RS00295 (OGM39_00295)	metJ	51297..51614 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=641719 OGM39_RS00275 WP_000644908.1 46774..47799(-) (cytR) [Escherichia coli strain R10]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=641719 OGM39_RS00275 WP_000644908.1 46774..47799(-) (cytR) [Escherichia coli strain R10]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625