Detailed information NTG0641707

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LN341_RS12945
• Genome accession: NZ_CP090364
• Coordinates: 2781824..2785261 (+)
• Length: 1145 a.a.
• NCBI ID: WP_234203510.1
• Uniprot ID: -
• Organism: Photobacterium sp. TLY01
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2776824..2790261

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LN341_RS12925 (LN341_12925)	erpA	2777264..2777605 (-)	342	WP_046219052.1	iron-sulfur cluster insertion protein ErpA	-
LN341_RS12930 (LN341_12930)	hemL	2777802..2779097 (+)	1296	WP_046219053.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LN341_RS12935 (LN341_12935)	-	2779323..2780405 (+)	1083	WP_082095641.1	AI-2E family transporter	-
LN341_RS12940 (LN341_12940)	rsmC	2780501..2781541 (+)	1041	WP_234203509.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LN341_RS12945 (LN341_12945)	chiS	2781824..2785261 (+)	3438	WP_234203510.1	response regulator	Regulator
LN341_RS12950 (LN341_12950)	-	2786105..2787778 (+)	1674	WP_234203511.1	ABC transporter substrate-binding protein	-
LN341_RS12955 (LN341_12955)	-	2787919..2788908 (+)	990	WP_234203512.1	ABC transporter permease	-
LN341_RS12960 (LN341_12960)	-	2788911..2789939 (+)	1029	WP_046219058.1	ABC transporter permease	-

Sequence

Protein

• Length: 1145 a.a.
• Molecular weight: 129165.23 Da
• Isoelectric Point: 5.4324

>NTDB_id=641707 LN341_RS12945 WP_234203510.1 2781824..2785261(+) (chiS) [Photobacterium sp. TLY01]
MQNTTRFKRLQHTLMLAFLLLSLIPLTLSSLFFLHSHTRDLAEQSTSHLASLRDNKRQQLSAFFTAKESEIQSFVRSELA
NASGGRFYGIVGAFRQLGDINRLSQGATNGEYFSRTLITRPPSSEVDNTSPDFIVQERYRLIYKRYHWAYEEYLKRSDFS
DILLVDLDGNVVYTSRSPELFAASLQTGSAQYPALSQTYSSIKTLTTQFRERQSRDSHREISDREPEQMPIAFTDFAADG
SNREATAWFAAPIIQHGYLHSYAFFKLSNRTIADVMSNRSEANQYVQTLLVGQDHNLRLPNDGDLPAELTSAGIDHALAG
QAGVGSLLNFNKIPVLSAYAPIDVLGNKWALVVELPEQEAFSRIHQLEEFFLLAILGAVILVTITAHWLSNYITAPLLRL
TWAAEQVSAGDLDQKITSTDRRDEIGRLAISFARMQRSIREKITLIREQNTELEHNLAVIQQQNEELQAADKLKDEFLAT
TSHELRTPLHGMVGIAEAMLAGANGPIQPDQQRQLDMIISSGQRLTKLVDDLLDYHKMRYGDLDIQPHAVDLAAANRLVL
ELSAHLLDGKPVRIINQIPPDLPLVVADEQRLEQILYNLVGNAIKYTSEGKIILSATVLESQVRIQVVDTGQGIPAEQLE
HIFEPLVQANTGSANYHQGAGLGLSISRQLIELMGGSLYVSSQPMIGTTFSFTLPLATKEDIARSQLSAPQHGHFQAPRQ
DANTVNIDDLPDNPDGELLLVVDDEPVNLQVVTSFLRIAGYRVITAENGQQALSLMKEYQPSLVLLDVMMPGMNGYEVCQ
QLRTRYSLTELPVIMLSALGQVRDRVKGFEFGANDYLTKPFNKDELTARIRAHLQAAQTEKQRTENQWLQQEIRHREQVQ
QALLDTQTRLLGLLESTSEAILCTREDGRIRYANHAAGQLFQRAPEQLERLSIQDLLLTQLPEDIEQNRHYSGELTYRIQ
DSKQTLTTDLIQLPAESGLSQMFIFDNQGPSSVQRIALLENAVDVLSGFATDGDKHSLQRLRDMGGEFSQLADRLDHAQP
DKADQLRHILVDVMKDCLQFWETSTGKTKFDLAEESGLWRVYLDRSTLQTRTLDKYLQLETLPKTPRWRTVLNTLDFVLE
RCTKVSQEREAIIEQRNRLQRMISQ

Nucleotide

• Length: 3438 bp

>NTDB_id=641707 LN341_RS12945 WP_234203510.1 2781824..2785261(+) (chiS) [Photobacterium sp. TLY01]
ATGCAAAATACCACCCGTTTTAAACGTCTCCAGCATACGCTGATGCTGGCTTTCCTTTTGCTGAGCCTGATCCCGCTCAC
GCTATCTTCGCTGTTTTTCCTGCACTCTCACACCCGGGATCTGGCAGAACAGAGTACCAGCCACCTGGCGTCATTACGTG
ATAACAAACGCCAGCAGCTCAGTGCCTTTTTCACCGCGAAAGAATCGGAAATACAGAGTTTTGTCCGCTCTGAGCTGGCC
AATGCCAGTGGCGGACGTTTTTACGGTATTGTCGGCGCATTCCGCCAGCTGGGTGACATCAACCGCCTCAGTCAGGGTGC
CACGAACGGCGAATACTTCAGCCGTACCCTGATCACCCGGCCGCCATCCAGTGAAGTGGATAACACTTCTCCTGATTTTA
TCGTTCAGGAAAGATATCGCCTGATTTACAAACGCTACCACTGGGCCTATGAGGAATATCTGAAACGCTCTGATTTCAGT
GACATTCTGCTGGTCGATCTCGACGGCAATGTGGTGTACACCTCTCGCAGCCCGGAATTATTTGCAGCCAGTTTACAGAC
CGGCAGCGCGCAATATCCGGCACTCAGCCAGACTTACAGCAGCATCAAAACCCTGACCACCCAGTTCAGAGAGCGGCAGT
CCCGTGATAGTCACAGGGAAATCAGTGATCGCGAGCCGGAGCAGATGCCTATCGCCTTTACTGATTTTGCCGCCGATGGC
AGTAACCGCGAAGCGACTGCCTGGTTCGCCGCCCCGATTATTCAGCATGGTTACCTGCATAGTTACGCTTTCTTTAAACT
GAGTAACCGCACCATTGCCGACGTCATGTCCAATCGCAGTGAAGCCAATCAGTACGTTCAGACGCTCCTCGTCGGCCAGG
ATCATAACCTGCGCCTGCCCAACGACGGCGATTTACCGGCGGAGCTGACCAGTGCCGGGATCGATCATGCACTGGCAGGC
CAGGCCGGCGTCGGCAGCTTGCTGAACTTCAACAAGATTCCTGTACTCAGTGCGTATGCTCCGATAGACGTGCTCGGCAA
CAAATGGGCCCTGGTGGTTGAGTTGCCTGAGCAGGAAGCTTTCTCCCGGATTCATCAACTGGAGGAATTTTTCCTCCTTG
CGATTCTGGGAGCCGTTATCCTGGTGACGATTACAGCGCACTGGTTGTCCAATTACATTACTGCGCCTTTGCTGCGTCTG
ACCTGGGCTGCGGAGCAGGTTTCCGCCGGCGATCTGGACCAGAAAATCACCTCCACCGATCGCCGTGACGAAATTGGCCG
TCTGGCGATCAGCTTTGCCAGAATGCAACGCTCGATTCGTGAAAAAATCACCCTGATCCGCGAGCAAAATACCGAGCTGG
AACACAATCTGGCCGTCATCCAACAGCAGAACGAAGAACTGCAGGCAGCAGACAAACTCAAAGACGAATTTCTGGCCACC
ACCTCCCATGAACTGCGTACCCCGCTGCACGGTATGGTCGGCATCGCCGAAGCCATGCTGGCCGGGGCCAACGGGCCAAT
CCAGCCGGATCAGCAACGTCAGCTGGACATGATCATCAGCAGTGGTCAGCGCCTGACCAAGCTGGTCGACGATTTGCTCG
ACTACCACAAAATGCGCTACGGCGATCTGGATATCCAGCCCCACGCGGTCGATCTGGCCGCGGCCAACCGCTTAGTGCTG
GAACTGTCGGCACATCTGCTTGATGGCAAGCCGGTGCGGATCATCAATCAGATCCCGCCGGATCTGCCCCTCGTGGTTGC
TGACGAACAACGCCTGGAACAGATTTTGTACAACCTGGTAGGCAACGCCATTAAGTACACCTCAGAGGGCAAAATTATCC
TGTCCGCCACTGTGCTGGAAAGTCAGGTCCGCATTCAGGTGGTCGATACCGGTCAGGGCATACCCGCCGAACAACTGGAG
CACATTTTTGAACCCCTGGTGCAGGCCAACACTGGCTCGGCCAACTATCACCAGGGAGCCGGGCTGGGACTGTCCATCAG
CCGTCAGCTGATTGAGCTGATGGGCGGCAGCCTGTATGTCAGCAGTCAGCCTATGATAGGGACGACCTTCAGCTTCACCC
TGCCACTGGCCACCAAAGAGGACATTGCCCGCAGTCAGCTCAGCGCGCCGCAGCATGGTCATTTTCAGGCGCCGCGCCAG
GATGCCAATACCGTCAATATTGATGACTTGCCCGATAACCCGGATGGCGAGCTCTTACTGGTGGTCGACGATGAACCGGT
GAACTTACAGGTCGTTACCAGCTTTTTACGCATTGCCGGCTATCGGGTGATCACCGCAGAAAACGGTCAGCAAGCCCTCA
GTCTGATGAAAGAGTATCAACCGTCGCTGGTGCTGCTTGATGTCATGATGCCGGGCATGAACGGTTATGAAGTGTGCCAG
CAATTGCGGACCCGCTACAGTCTGACTGAACTGCCGGTCATCATGCTGTCTGCATTAGGCCAAGTGCGGGACCGGGTCAA
AGGCTTTGAATTTGGTGCCAACGACTACCTGACCAAACCCTTTAATAAAGACGAGCTGACCGCCCGGATCCGGGCCCACC
TGCAAGCCGCTCAGACGGAAAAACAGCGCACTGAAAATCAATGGCTGCAGCAGGAAATCCGCCACCGTGAACAGGTACAG
CAGGCCCTGCTGGATACCCAGACTCGCCTGCTGGGTCTGCTCGAATCCACCAGCGAGGCCATCCTGTGTACCCGTGAAGA
TGGCCGTATCCGTTATGCCAATCATGCTGCCGGCCAGCTGTTCCAGCGCGCGCCGGAACAGCTGGAACGCTTATCGATTC
AGGATCTGCTGCTGACCCAACTACCTGAGGATATCGAACAGAACCGCCATTACAGCGGCGAACTGACCTATCGGATTCAA
GATAGCAAACAGACGCTGACAACCGATCTGATCCAGCTACCCGCCGAGTCCGGGCTCAGCCAGATGTTTATCTTTGACAA
TCAGGGGCCCAGCTCGGTACAACGTATTGCGTTACTGGAAAATGCCGTGGATGTGCTTTCCGGTTTTGCCACAGATGGCG
ACAAACACAGCCTGCAGCGCTTACGAGACATGGGCGGCGAGTTCAGCCAGCTGGCAGACCGGCTGGATCACGCTCAGCCG
GATAAAGCCGATCAACTGAGACATATACTGGTCGATGTGATGAAAGACTGTCTGCAGTTCTGGGAAACATCCACCGGAAA
AACCAAATTTGATCTGGCAGAAGAAAGCGGCTTGTGGCGCGTGTACCTGGACAGGAGCACGCTGCAAACCCGCACCCTGG
ATAAATATTTACAGCTGGAAACCCTGCCGAAAACACCGCGCTGGCGCACTGTGCTCAACACGCTGGATTTTGTGCTGGAG
CGCTGTACCAAAGTGAGCCAGGAAAGAGAGGCCATCATTGAGCAGCGTAACCGGCTCCAGCGCATGATCAGCCAGTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (740-851)

• HAMP domain (HAMP) (388-441)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (588-697)

• PAS fold (PAS) (892-949)

• His Kinase A (phospho-acceptor) domain (HisKA) (474-539)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	56.228	99.563	0.56