Detailed information NTG0641655

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM40_RS07345
• Genome accession: NZ_CP107155
• Coordinates: 1506135..1507127 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R11
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1501135..1512127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM40_RS07325 (OGM40_07310)	ygbM	1501773..1502549 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM40_RS07330 (OGM40_07315)	ygbN	1502638..1504002 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM40_RS07335 (OGM40_07320)	-	1504145..1505188 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM40_RS07340 (OGM40_07325)	-	1505413..1505964 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM40_RS07345 (OGM40_07330)	rpoS	1506135..1507127 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM40_RS07350 (OGM40_07335)	nlpD	1507190..1508284 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM40_RS07355 (OGM40_07340)	pcm	1508469..1509095 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM40_RS07360 (OGM40_07345)	surE	1509089..1509850 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM40_RS07365 (OGM40_07350)	truD	1509831..1510880 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM40_RS07370 (OGM40_07355)	ispF	1510877..1511356 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM40_RS07375 (OGM40_07360)	ispD	1511356..1512066 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641655 OGM40_RS07345 WP_000081550.1 1506135..1507127(-) (rpoS) [Escherichia coli strain R11]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641655 OGM40_RS07345 WP_000081550.1 1506135..1507127(-) (rpoS) [Escherichia coli strain R11]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715