Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LXN51_RS05135 Genome accession   NZ_CP090355
Coordinates   1087601..1088968 (-) Length   455 a.a.
NCBI ID   WP_085689697.1    Uniprot ID   -
Organism   Pseudomonas kribbensis strain H38E-23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1082601..1093968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN51_RS05110 (LXN51_05110) - 1082836..1083546 (+) 711 WP_085703152.1 GntR family transcriptional regulator -
  LXN51_RS05115 (LXN51_05115) yjiA 1083669..1084643 (-) 975 WP_176247737.1 GTPase -
  LXN51_RS05120 (LXN51_05120) - 1084805..1085002 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  LXN51_RS05125 (LXN51_05125) - 1085018..1087084 (-) 2067 WP_085697548.1 carbon starvation CstA family protein -
  LXN51_RS05130 (LXN51_05130) - 1087244..1087600 (+) 357 WP_085697549.1 PilZ domain-containing protein -
  LXN51_RS05135 (LXN51_05135) radA 1087601..1088968 (-) 1368 WP_085689697.1 DNA repair protein RadA Machinery gene
  LXN51_RS05140 (LXN51_05140) - 1089115..1089442 (-) 328 Protein_1007 catalase -
  LXN51_RS05145 (LXN51_05145) mscL 1089843..1090256 (+) 414 WP_085697550.1 large-conductance mechanosensitive channel protein MscL -
  LXN51_RS05150 (LXN51_05150) - 1090290..1091066 (-) 777 WP_227233594.1 ferredoxin--NADP reductase -
  LXN51_RS05155 (LXN51_05155) - 1091362..1092069 (+) 708 WP_085697552.1 autoinducer binding domain-containing protein -
  LXN51_RS05160 (LXN51_05160) - 1092246..1093370 (+) 1125 WP_227233596.1 methyltransferase -
  LXN51_RS05165 (LXN51_05165) - 1093440..1093607 (-) 168 WP_007950992.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48716.16 Da        Isoelectric Point: 6.8987

>NTDB_id=641639 LXN51_RS05135 WP_085689697.1 1087601..1088968(-) (radA) [Pseudomonas kribbensis strain H38E-23]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKNMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=641639 LXN51_RS05135 WP_085689697.1 1087601..1088968(-) (radA) [Pseudomonas kribbensis strain H38E-23]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAGTGCGGCGAATG
CGGCGCCTGGAATACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCTCCGAGCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAAATTCCACGTTTTTCCACAGCCTCCGGCGAACTC
GACCGAGTGCTCGGCGGTGGCCTGGTGGACGGTTCGGTGGTACTGATCGGCGGTGATCCTGGCATCGGCAAATCGACGAT
TCTGTTACAGACCCTGTGCAACCTCGCCAAGAACATGCCGGCGCTGTATGTCACTGGCGAAGAATCCCAACAACAGGTTG
CCATGCGCGCCCGTCGCCTGGGCCTGCCCCAGGATCAATTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGCCAGGAAAAGCCCAAGGTGATGGTGATCGACTCGATCCAGACGATCTTCACCGAACAACTGCAATCGGCACC
GGGTGGCGTGTCCCAGGTGCGCGAAAGTGCGGCACTGCTGGTGCGGTACGCCAAGCAAAGCGGTACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTCGCAGGGCCGCGCGTTCTGGAGCATATGGTCGACACCGTGCTGTATTTCGAA
GGCGAATCCGACGGTCGGTTGCGTTTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCGGTCAATGAACTCGGCGTATTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACACGTGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTGGATGACAGTCACTTGGCC
AACCCGCGTCGAGTCACCCTGGGTCTGGACCAGAATCGTCTGGCGATGTTGTTGGCTGTTCTGCATCGTCATGGCGGCAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTCGGCGGGGTGAAAGTACTGGAAACCGCCTCCGACCTGGCGTTGA
TGGCCGCCGTCATGTCGAGCCTGCGTAATCGTCCGCTGCCCCACGACTTGCTGGTGTTCGGTGAAGTCGGTCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGTCAGGAGCGTCTGAAGGAGGCCGCCAAGCACGGCTTCAAGCGCGCGATCGTGCCAAA
GGGCAACGCGCCGAAGGAAGCGCCGGCAGGGTTGCAGATCATAGCGGTGACGCGGCTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(81-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus mitis NCTC 12261

46.087

100

0.466
  radA Streptococcus mitis SK321

46.272

100

0.464