Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LXN49_RS11705 Genome accession   NZ_CP090354
Coordinates   2327420..2328190 (-) Length   256 a.a.
NCBI ID   WP_024423019.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2322420..2333190
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS11685 (LXN49_11685) - 2322512..2323333 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  LXN49_RS11690 (LXN49_11690) - 2323359..2323997 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  LXN49_RS11695 (LXN49_11695) glyS 2324165..2326210 (-) 2046 WP_234107230.1 glycine--tRNA ligase subunit beta -
  LXN49_RS11700 (LXN49_11700) glyQ 2326203..2327090 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  LXN49_RS11705 (LXN49_11705) recO 2327420..2328190 (-) 771 WP_024423019.1 DNA repair protein RecO Machinery gene
  LXN49_RS11710 (LXN49_11710) - 2328226..2328369 (-) 144 WP_003217288.1 YqzL family protein -
  LXN49_RS11715 (LXN49_11715) era 2328518..2329423 (-) 906 WP_007501305.1 GTPase Era -
  LXN49_RS11720 (LXN49_11720) - 2329416..2329814 (-) 399 WP_008356263.1 cytidine deaminase -
  LXN49_RS11725 (LXN49_11725) - 2329928..2330314 (-) 387 WP_024423020.1 diacylglycerol kinase family protein -
  LXN49_RS11730 (LXN49_11730) ybeY 2330292..2330771 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  LXN49_RS11735 (LXN49_11735) - 2330772..2332883 (-) 2112 WP_370880885.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29307.95 Da        Isoelectric Point: 8.1204

>NTDB_id=641605 LXN49_RS11705 WP_024423019.1 2327420..2328190(-) (recO) [Bacillus safensis strain H31R-08]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=641605 LXN49_RS11705 WP_024423019.1 2327420..2328190(-) (recO) [Bacillus safensis strain H31R-08]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTAATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGCCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCTGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754