Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   LXN49_RS11180 Genome accession   NZ_CP090354
Coordinates   2236903..2237706 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain H31R-08     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2231903..2242706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS11165 (LXN49_11165) - 2234107..2234343 (+) 237 WP_024422931.1 DUF2627 domain-containing protein -
  LXN49_RS11170 (LXN49_11170) - 2234380..2235117 (-) 738 WP_024422932.1 glycerophosphodiester phosphodiesterase -
  LXN49_RS11175 (LXN49_11175) - 2235347..2236447 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  LXN49_RS11180 (LXN49_11180) spo0A 2236903..2237706 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  LXN49_RS11185 (LXN49_11185) spoIVB 2237991..2239268 (-) 1278 WP_025092993.1 SpoIVB peptidase -
  LXN49_RS11190 (LXN49_11190) recN 2239469..2241202 (-) 1734 WP_103131960.1 DNA repair protein RecN Machinery gene
  LXN49_RS11195 (LXN49_11195) ahrC 2241236..2241685 (-) 450 WP_024422938.1 transcriptional regulator AhrC/ArgR -
  LXN49_RS11200 (LXN49_11200) - 2241849..2242703 (-) 855 WP_025092991.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=641600 LXN49_RS11180 WP_024422935.1 2236903..2237706(-) (spo0A) [Bacillus safensis strain H31R-08]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=641600 LXN49_RS11180 WP_024422935.1 2236903..2237706(-) (spo0A) [Bacillus safensis strain H31R-08]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGACATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCATTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTAGGCGCATCCTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGTAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATC
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCCATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACTAAAGTGTTGTACCCAGACATTGCAAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGAAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGCGTTTAGAGCATAGAGCAAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884