Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LXN49_RS10220 Genome accession   NZ_CP090354
Coordinates   2063005..2063640 (+) Length   211 a.a.
NCBI ID   WP_024428112.1    Uniprot ID   A0A5C0WK87
Organism   Bacillus safensis strain H31R-08     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2058005..2068640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS10180 (LXN49_10180) - 2058185..2059303 (+) 1119 WP_234107195.1 NADH-dependent flavin oxidoreductase -
  LXN49_RS10185 (LXN49_10185) - 2059357..2059863 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  LXN49_RS10190 (LXN49_10190) - 2060034..2060453 (+) 420 WP_024422768.1 Hsp20/alpha crystallin family protein -
  LXN49_RS10195 (LXN49_10195) - 2060473..2060901 (-) 429 WP_234107196.1 YppG family protein -
  LXN49_RS10200 (LXN49_10200) - 2061010..2061390 (-) 381 WP_224426683.1 YppE family protein -
  LXN49_RS10205 (LXN49_10205) - 2061440..2061673 (-) 234 WP_224426684.1 DUF5446 family protein -
  LXN49_RS10210 (LXN49_10210) sspM 2061871..2061975 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  LXN49_RS10215 (LXN49_10215) - 2062002..2062958 (-) 957 WP_044333251.1 DUF2515 domain-containing protein -
  LXN49_RS10220 (LXN49_10220) recU 2063005..2063640 (+) 636 WP_024428112.1 Holliday junction resolvase RecU Machinery gene
  LXN49_RS10225 (LXN49_10225) - 2063660..2066374 (+) 2715 WP_073206060.1 PBP1A family penicillin-binding protein -
  LXN49_RS10230 (LXN49_10230) - 2066615..2067124 (-) 510 WP_025093074.1 YpoC family protein -
  LXN49_RS10235 (LXN49_10235) nth 2067121..2067783 (-) 663 WP_024422776.1 endonuclease III -
  LXN49_RS10240 (LXN49_10240) - 2067801..2068505 (-) 705 WP_024422777.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24317.64 Da        Isoelectric Point: 9.7224

>NTDB_id=641599 LXN49_RS10220 WP_024428112.1 2063005..2063640(+) (recU) [Bacillus safensis strain H31R-08]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFYFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=641599 LXN49_RS10220 WP_024428112.1 2063005..2063640(+) (recU) [Bacillus safensis strain H31R-08]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTACTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WK87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.762

95.735

0.706