Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   LXN49_RS07835 Genome accession   NZ_CP090354
Coordinates   1579993..1580895 (+) Length   300 a.a.
NCBI ID   WP_234107783.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1574993..1585895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS07815 (LXN49_07815) - 1575655..1577394 (+) 1740 WP_234107782.1 glycosyltransferase -
  LXN49_RS07820 (LXN49_07820) - 1577391..1577666 (+) 276 WP_047202155.1 FlhB-like flagellar biosynthesis protein -
  LXN49_RS07825 (LXN49_07825) sucC 1577844..1579004 (+) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  LXN49_RS07830 (LXN49_07830) sucD 1579027..1579929 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  LXN49_RS07835 (LXN49_07835) dprA 1579993..1580895 (+) 903 WP_234107783.1 DNA-processing protein DprA Machinery gene
  LXN49_RS07840 (LXN49_07840) topA 1581089..1583164 (+) 2076 WP_234107784.1 type I DNA topoisomerase -
  LXN49_RS07845 (LXN49_07845) trmFO 1583235..1584539 (+) 1305 WP_149126666.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LXN49_RS07850 (LXN49_07850) xerC 1584602..1585519 (+) 918 WP_024424182.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34141.59 Da        Isoelectric Point: 9.1119

>NTDB_id=641594 LXN49_RS07835 WP_234107783.1 1579993..1580895(+) (dprA) [Bacillus safensis strain H31R-08]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDFTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=641594 LXN49_RS07835 WP_234107783.1 1579993..1580895(+) (dprA) [Bacillus safensis strain H31R-08]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACATTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGAACAAGAGTTCCATCATCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGGAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAGCATTTATACCCAAAAGAGCATGT
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCATTGACGAAAGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGATCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCGGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCCACAAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Legionella pneumophila strain ERS1305867

38.033

100

0.387