Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LXN49_RS06990 Genome accession   NZ_CP090354
Coordinates   1413373..1413651 (+) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain H31R-08     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408373..1418651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS06965 (LXN49_06965) - 1408466..1408741 (-) 276 WP_024424743.1 hypothetical protein -
  LXN49_RS06970 (LXN49_06970) - 1408885..1410504 (+) 1620 WP_234107748.1 ABC-F family ATP-binding cassette domain-containing protein -
  LXN49_RS06975 (LXN49_06975) - 1410543..1411775 (-) 1233 WP_024424744.1 aminopeptidase -
  LXN49_RS06980 (LXN49_06980) - 1411883..1412014 (-) 132 WP_003210922.1 protein YkpC -
  LXN49_RS06985 (LXN49_06985) mreBH 1412089..1413096 (-) 1008 WP_024424745.1 rod-share determining protein MreBH -
  LXN49_RS06990 (LXN49_06990) abrB 1413373..1413651 (+) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LXN49_RS06995 (LXN49_06995) - 1413797..1415107 (+) 1311 WP_234107750.1 ATP-binding protein -
  LXN49_RS07000 (LXN49_07000) - 1415112..1415948 (+) 837 WP_234107751.1 gamma-glutamylcyclotransferase -
  LXN49_RS07005 (LXN49_07005) - 1415986..1416654 (+) 669 WP_008345123.1 potassium channel family protein -
  LXN49_RS07010 (LXN49_07010) ade 1416917..1418644 (+) 1728 WP_234107752.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=641593 LXN49_RS06990 WP_024424746.1 1413373..1413651(+) (abrB) [Bacillus safensis strain H31R-08]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=641593 LXN49_RS06990 WP_024424746.1 1413373..1413651(+) (abrB) [Bacillus safensis strain H31R-08]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAGCTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543