Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LXN49_RS05185 Genome accession   NZ_CP090354
Coordinates   1073802..1074380 (+) Length   192 a.a.
NCBI ID   WP_024425481.1    Uniprot ID   A0A1L6ZJL9
Organism   Bacillus safensis strain H31R-08     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068802..1079380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS19080 - 1069297..1069908 (-) 612 WP_404841197.1 methyl-accepting chemotaxis protein -
  LXN49_RS19085 - 1070053..1070592 (-) 540 Protein_965 protoglobin family protein -
  LXN49_RS05170 (LXN49_05170) - 1070685..1072217 (-) 1533 WP_151862947.1 FAD-dependent oxidoreductase -
  LXN49_RS05175 (LXN49_05175) - 1072359..1073219 (+) 861 WP_216100213.1 SDR family oxidoreductase -
  LXN49_RS05180 (LXN49_05180) - 1073276..1073512 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  LXN49_RS05185 (LXN49_05185) comK 1073802..1074380 (+) 579 WP_024425481.1 competence protein ComK Regulator
  LXN49_RS05190 (LXN49_05190) - 1074680..1075162 (+) 483 WP_024425482.1 hypothetical protein -
  LXN49_RS05195 (LXN49_05195) - 1075193..1076632 (-) 1440 WP_044335813.1 PLP-dependent aminotransferase family protein -
  LXN49_RS05200 (LXN49_05200) - 1076778..1077947 (+) 1170 WP_044335812.1 MFS transporter -
  LXN49_RS05205 (LXN49_05205) - 1078013..1078291 (+) 279 WP_024425485.1 barstar family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22350.37 Da        Isoelectric Point: 8.7996

>NTDB_id=641580 LXN49_RS05185 WP_024425481.1 1073802..1074380(+) (comK) [Bacillus safensis strain H31R-08]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVTFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=641580 LXN49_RS05185 WP_024425481.1 1073802..1074380(+) (comK) [Bacillus safensis strain H31R-08]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCAGTTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCAGATTCTTCGGCTCAAGCTATGCAGGCAGAAAGGCGGGAACATACGAAGTAACAGGAATATCTCATAAACCTCCA
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACTTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCACCTTTACAAATGAGCAAACCGTCAAACTTG
ATGTCTCATATAAATCATTTGAGAGTCAGGTGCACCGGACAGCATATCTCCGAACGAAATTTCAAGATCGTCTTGATGGT
GGTCTTCCGAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAATCTCGTATACGATTTTATATTAAGGGA
GCTTCGTAACAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L6ZJL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.979

100

0.62