Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LXN49_RS01905 Genome accession   NZ_CP090354
Coordinates   355388..355816 (-) Length   142 a.a.
NCBI ID   WP_044332685.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 350388..360816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS01875 (LXN49_01875) - 350551..350880 (+) 330 WP_024424311.1 YckD family protein -
  LXN49_RS01880 (LXN49_01880) - 350924..351688 (-) 765 WP_044332701.1 MBL fold metallo-hydrolase -
  LXN49_RS01885 (LXN49_01885) - 351804..352220 (+) 417 WP_025092811.1 Lrp/AsnC family transcriptional regulator -
  LXN49_RS01890 (LXN49_01890) - 352249..353055 (+) 807 WP_044332699.1 aminoglycoside N(3)-acetyltransferase -
  LXN49_RS01895 (LXN49_01895) - 353057..353443 (-) 387 WP_041106618.1 competence protein ComJ -
  LXN49_RS01900 (LXN49_01900) - 353563..355260 (-) 1698 WP_044332688.1 methyl-accepting chemotaxis protein -
  LXN49_RS01905 (LXN49_01905) nucA/comI 355388..355816 (-) 429 WP_044332685.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  LXN49_RS01910 (LXN49_01910) - 356184..358253 (+) 2070 WP_234107560.1 hydantoinase/oxoprolinase family protein -
  LXN49_RS01915 (LXN49_01915) - 358243..360231 (+) 1989 WP_122631501.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15952.92 Da        Isoelectric Point: 6.1349

>NTDB_id=641574 LXN49_RS01905 WP_044332685.1 355388..355816(-) (nucA/comI) [Bacillus safensis strain H31R-08]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVHPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=641574 LXN49_RS01905 WP_044332685.1 355388..355816(-) (nucA/comI) [Bacillus safensis strain H31R-08]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCATCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCAATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACACCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535