Detailed information NTG0641571

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM41_RS08310
• Genome accession: NZ_CP107153
• Coordinates: 1653647..1654639 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1648647..1659639

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM41_RS08290 (OGM41_08275)	ygbM	1649285..1650061 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM41_RS08295 (OGM41_08280)	ygbN	1650150..1651514 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM41_RS08300 (OGM41_08285)	-	1651657..1652700 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM41_RS08305 (OGM41_08290)	-	1652925..1653476 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM41_RS08310 (OGM41_08295)	rpoS	1653647..1654639 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM41_RS08315 (OGM41_08300)	nlpD	1654702..1655796 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM41_RS08320 (OGM41_08305)	pcm	1655981..1656607 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM41_RS08325 (OGM41_08310)	surE	1656601..1657362 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM41_RS08330 (OGM41_08315)	truD	1657343..1658392 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM41_RS08335 (OGM41_08320)	ispF	1658389..1658868 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM41_RS08340 (OGM41_08325)	ispD	1658868..1659578 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641571 OGM41_RS08310 WP_000081550.1 1653647..1654639(-) (rpoS) [Escherichia coli strain R12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641571 OGM41_RS08310 WP_000081550.1 1653647..1654639(-) (rpoS) [Escherichia coli strain R12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715