Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LXN49_RS00260 Genome accession   NZ_CP090354
Coordinates   47945..48235 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain H31R-08     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 42945..53235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN49_RS00220 (LXN49_00220) - 42977..43306 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  LXN49_RS00225 (LXN49_00225) - 43319..43759 (+) 441 WP_024425626.1 YaaR family protein -
  LXN49_RS00230 (LXN49_00230) holB 43771..44760 (+) 990 WP_024425627.1 DNA polymerase III subunit delta' -
  LXN49_RS00235 (LXN49_00235) - 44763..45590 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  LXN49_RS00240 (LXN49_00240) yabA 45605..45958 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  LXN49_RS00245 (LXN49_00245) - 46014..46757 (+) 744 WP_024427205.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LXN49_RS00250 (LXN49_00250) - 46744..47043 (+) 300 WP_024425631.1 GIY-YIG nuclease family protein -
  LXN49_RS00255 (LXN49_00255) rsmI 47018..47899 (+) 882 WP_234107520.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LXN49_RS00260 (LXN49_00260) abrB 47945..48235 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LXN49_RS00265 (LXN49_00265) metG 48757..50757 (+) 2001 WP_234107521.1 methionine--tRNA ligase -
  LXN49_RS00270 (LXN49_00270) - 50839..51606 (+) 768 WP_024425634.1 TatD family hydrolase -
  LXN49_RS00275 (LXN49_00275) - 51851..53053 (+) 1203 WP_034624439.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=641571 LXN49_RS00260 WP_087975202.1 47945..48235(-) (abrB) [Bacillus safensis strain H31R-08]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=641571 LXN49_RS00260 WP_087975202.1 47945..48235(-) (abrB) [Bacillus safensis strain H31R-08]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938