Detailed information NTG0064146

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HRR20_RS04900
• Genome accession: NZ_AP021893
• Coordinates: 1035723..1036715 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-06-4CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1030723..1041715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRR20_RS04870 (VEGS07_09610)	ispD	1030784..1031494 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HRR20_RS04875 (VEGS07_09620)	ispF	1031494..1031973 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HRR20_RS04880 (VEGS07_09630)	truD	1031970..1033019 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HRR20_RS04885 (VEGS07_09640)	surE	1033000..1033761 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HRR20_RS04890 (VEGS07_09650)	pcm	1033755..1034381 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HRR20_RS04895 (VEGS07_09660)	nlpD	1034566..1035660 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HRR20_RS04900 (VEGS07_09670)	rpoS	1035723..1036715 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HRR20_RS04905 (VEGS07_09680)	ygbN	1036809..1038173 (-)	1365	WP_000104429.1	GntP family transporter	-
HRR20_RS04910 (VEGS07_09690)	ygbM	1038262..1039038 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HRR20_RS04915 (VEGS07_09700)	ygbL	1039043..1039681 (-)	639	WP_001278994.1	aldolase	-
HRR20_RS04920 (VEGS07_09710)	otnK	1039678..1040940 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64146 HRR20_RS04900 WP_000081550.1 1035723..1036715(+) (rpoS) [Escherichia coli strain 2018-06-4CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64146 HRR20_RS04900 WP_000081550.1 1035723..1036715(+) (rpoS) [Escherichia coli strain 2018-06-4CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715