Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   OGM43_RS20865 Genome accession   NZ_CP107147
Coordinates   4287513..4288118 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain R14     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4282513..4293118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM43_RS20835 (OGM43_20805) rsmS 4283215..4283379 (-) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -
  OGM43_RS20840 (OGM43_20810) priC 4283393..4283920 (-) 528 WP_000844862.1 primosomal replication protein N'' -
  OGM43_RS20845 (OGM43_20815) ybaN 4283990..4284367 (+) 378 WP_001188900.1 DUF454 family protein -
  OGM43_RS20850 (OGM43_20820) apt 4284520..4285071 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  OGM43_RS20855 (OGM43_20825) dnaX 4285200..4287131 (+) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  OGM43_RS20860 (OGM43_20830) ybaB 4287184..4287513 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  OGM43_RS20865 (OGM43_20835) recR 4287513..4288118 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  OGM43_RS20870 (OGM43_20840) htpG 4288228..4290102 (+) 1875 WP_029700694.1 molecular chaperone HtpG -
  OGM43_RS20875 (OGM43_20845) adk 4290283..4290927 (+) 645 WP_001220233.1 adenylate kinase -
  OGM43_RS20880 (OGM43_20850) hemH 4291059..4292021 (+) 963 WP_001250114.1 ferrochelatase -
  OGM43_RS20885 (OGM43_20855) aes 4292018..4292977 (-) 960 WP_000801794.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=641456 OGM43_RS20865 WP_001195025.1 4287513..4288118(+) (recR) [Escherichia coli strain R14]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=641456 OGM43_RS20865 WP_001195025.1 4287513..4288118(+) (recR) [Escherichia coli strain R14]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443