Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZV00_RS16750 Genome accession   NZ_CP090311
Coordinates   3576736..3578103 (-) Length   455 a.a.
NCBI ID   WP_095166434.1    Uniprot ID   A0A7X1GEU6
Organism   Pseudomonas kielensis strain 5BT     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3571736..3583103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZV00_RS16730 (LZV00_16695) yjiA 3572823..3573794 (-) 972 WP_182342421.1 GTPase -
  LZV00_RS16735 (LZV00_16700) - 3573919..3574116 (-) 198 WP_028620750.1 YbdD/YjiX family protein -
  LZV00_RS16740 (LZV00_16705) - 3574132..3576198 (-) 2067 WP_166591522.1 carbon starvation CstA family protein -
  LZV00_RS16745 (LZV00_16710) - 3576358..3576726 (+) 369 WP_166591523.1 PilZ domain-containing protein -
  LZV00_RS16750 (LZV00_16715) radA 3576736..3578103 (-) 1368 WP_095166434.1 DNA repair protein RadA Machinery gene
  LZV00_RS16755 (LZV00_16720) mscL 3578736..3579149 (+) 414 WP_166591524.1 large-conductance mechanosensitive channel protein MscL -
  LZV00_RS16760 (LZV00_16725) - 3579195..3579971 (-) 777 WP_166591525.1 ferredoxin--NADP reductase -
  LZV00_RS16765 (LZV00_16730) - 3580344..3581060 (+) 717 WP_166591526.1 LuxR family transcriptional regulator -
  LZV00_RS16770 (LZV00_16735) - 3581262..3582386 (+) 1125 WP_182342425.1 methyltransferase -
  LZV00_RS16775 (LZV00_16740) - 3582460..3582627 (-) 168 WP_166591528.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48716.21 Da        Isoelectric Point: 7.1317

>NTDB_id=641451 LZV00_RS16750 WP_095166434.1 3576736..3578103(-) (radA) [Pseudomonas kielensis strain 5BT]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLRIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=641451 LZV00_RS16750 WP_095166434.1 3576736..3578103(-) (radA) [Pseudomonas kielensis strain 5BT]
ATGGCCAAGGCAAAGCGCATGTACGGCTGCACCGAGTGCGGATCGACCTTCCCCAAATGGGCAGGCCAATGCGGTGAGTG
CGGTGCCTGGAACACCCTGACCGAAACGATGGTGGAGAGTGGCGGTGCCGCTGCCCCCAGCGGGCGTACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCTGAAGTCAGCGTTGAGGAAATTCCGCGTTTCTCCACCGCCTCCGGCGAACTG
GACCGAGTGCTGGGCGGCGGCCTGGTCGACGGTTCCGTGGTGCTGATTGGCGGTGATCCGGGGATCGGCAAGTCAACCAT
TCTCCTGCAAACCCTCTGCAACCTCGCCACCCGCATGCCGGCCCTCTATGTCACGGGTGAGGAGTCACAGCAGCAAGTGG
CCATGCGTGCCCGACGCCTGGGCTTGCCCCAGGATCAACTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATCGCC
ACGGCGCGGGTGGAAAAACCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACTGAACAGCTGCAGTCGGCACC
TGGCGGCGTGTCCCAGGTGCGCGAAAGTGCGGCGCTGTTGGTGCGTTATGCGAAACAGAGTGGCACGGCGATTTTCCTGG
TGGGGCACGTGACCAAGGAAGGCGCGCTGGCGGGGCCCAGGGTCCTGGAGCACATGGTCGACACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGGCGCCTGCGACTGTTGCGTGCGGTGAAAAACCGTTTTGGCGCGGTCAACGAGCTGGGTGTTTTTGG
CATGACCGACAAGGGGCTTAAAGAAGTCTCCAACCCATCGGCGATTTTCCTTACCCGGGCCCAGGAAGAAGTGCCGGGCA
GCGTGGTCATGGCCACGTGGGAAGGTACCCGCCCCATGTTGGTGGAGGTCCAGGCACTGGTGGATGACAGTCACCTGGCC
AATCCGCGTCGGGTGACCCTGGGCCTGGATCAGAACCGGTTGGCCATGCTGCTGGCGGTCCTGCATCGCCATGGCGGCAT
TCCGACCCACGACCAGGATGTATTTCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCTTCGGACCTGGCGTTGA
TGGCGGCCGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCCCACGACCTGCTGGTGTTTGGTGAAGTCGGCCTGTCCGGG
GAAGTGCGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAGGAAGCCGCCAAGCATGGCTTCAAGCGCGCGATCGTGCCCAA
GGGCAATGCGCCCAAGGAAGCGCCGGCAGGTTTGCGGATCATTGCCGTGACCCGCCTGGAGCAAGCCCTCGACGCATTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X1GEU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.087

100

0.466
  radA Streptococcus pneumoniae D39

46.087

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.466
  radA Streptococcus pneumoniae R6

46.087

100

0.466
  radA Streptococcus mitis NCTC 12261

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462