Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   LXF06_RS18240 Genome accession   NZ_CP090305
Coordinates   3770491..3771120 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain Z503     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3765491..3776120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF06_RS18225 helD 3765733..3767787 (-) 2055 WP_001295354.1 DNA helicase IV -
  LXF06_RS18230 yccF 3767910..3768356 (+) 447 WP_001261235.1 YccF domain-containing protein -
  LXF06_RS18235 yccS 3768366..3770528 (+) 2163 WP_000875061.1 YccS family putative transporter -
  LXF06_RS18240 sxy/tfoX 3770491..3771120 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  LXF06_RS18245 sulA 3771339..3771848 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  LXF06_RS18250 ompA 3772205..3773245 (+) 1041 WP_000750416.1 porin OmpA -
  LXF06_RS18255 matP 3773321..3773773 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  LXF06_RS18260 ycbZ 3773959..3775719 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=641439 LXF06_RS18240 WP_000839153.1 3770491..3771120(-) (sxy/tfoX) [Escherichia coli strain Z503]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=641439 LXF06_RS18240 WP_000839153.1 3770491..3771120(-) (sxy/tfoX) [Escherichia coli strain Z503]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1