Detailed information NTG0641435

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM43_RS14855
• Genome accession: NZ_CP107147
• Coordinates: 3021384..3022409 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain R14
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3016384..3027409

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM43_RS14825 (OGM43_14800)	zapB	3016468..3016713 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM43_RS14830 (OGM43_14805)	rraA	3016798..3017283 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM43_RS14835 (OGM43_14810)	menA	3017376..3018302 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM43_RS14840 (OGM43_14815)	hslU	3018369..3019700 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM43_RS14845 (OGM43_14820)	hslV	3019710..3020240 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM43_RS14850 (OGM43_14825)	ftsN	3020333..3021292 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM43_RS14855 (OGM43_14830)	cytR	3021384..3022409 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM43_RS14860 (OGM43_14835)	priA	3022565..3024763 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM43_RS14865 (OGM43_14840)	rpmE	3024966..3025178 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM43_RS14870 (OGM43_14845)	yiiX	3025239..3025847 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM43_RS14875 (OGM43_14850)	metJ	3025907..3026224 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=641435 OGM43_RS14855 WP_000644908.1 3021384..3022409(-) (cytR) [Escherichia coli strain R14]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=641435 OGM43_RS14855 WP_000644908.1 3021384..3022409(-) (cytR) [Escherichia coli strain R14]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625