Detailed information NTG0641402

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM43_RS08040
• Genome accession: NZ_CP107147
• Coordinates: 1615777..1616769 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain R14
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1610777..1621769

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM43_RS08020 (OGM43_08005)	ygbM	1611415..1612191 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM43_RS08025 (OGM43_08010)	ygbN	1612280..1613644 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM43_RS08030 (OGM43_08015)	-	1613787..1614830 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM43_RS08035 (OGM43_08020)	-	1615055..1615606 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM43_RS08040 (OGM43_08025)	rpoS	1615777..1616769 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM43_RS08045 (OGM43_08030)	nlpD	1616832..1617926 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM43_RS08050 (OGM43_08035)	pcm	1618111..1618737 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM43_RS08055 (OGM43_08040)	surE	1618731..1619492 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM43_RS08060 (OGM43_08045)	truD	1619473..1620522 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM43_RS08065 (OGM43_08050)	ispF	1620519..1620998 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM43_RS08070 (OGM43_08055)	ispD	1620998..1621708 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641402 OGM43_RS08040 WP_000081550.1 1615777..1616769(-) (rpoS) [Escherichia coli strain R14]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641402 OGM43_RS08040 WP_000081550.1 1615777..1616769(-) (rpoS) [Escherichia coli strain R14]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715