Detailed information NTG0641316

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM44_RS07465
• Genome accession: NZ_CP107143
• Coordinates: 1533097..1534089 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1528097..1539089

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM44_RS07445 (OGM44_07435)	ygbM	1528735..1529511 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM44_RS07450 (OGM44_07440)	ygbN	1529600..1530964 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM44_RS07455 (OGM44_07445)	-	1531107..1532150 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM44_RS07460 (OGM44_07450)	-	1532375..1532926 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM44_RS07465 (OGM44_07455)	rpoS	1533097..1534089 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM44_RS07470 (OGM44_07460)	nlpD	1534152..1535246 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM44_RS07475 (OGM44_07465)	pcm	1535431..1536057 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM44_RS07480 (OGM44_07470)	surE	1536051..1536812 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM44_RS07485 (OGM44_07475)	truD	1536793..1537842 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM44_RS07490 (OGM44_07480)	ispF	1537839..1538318 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM44_RS07495 (OGM44_07485)	ispD	1538318..1539028 (-)	711	WP_103566117.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641316 OGM44_RS07465 WP_000081550.1 1533097..1534089(-) (rpoS) [Escherichia coli strain S2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641316 OGM44_RS07465 WP_000081550.1 1533097..1534089(-) (rpoS) [Escherichia coli strain S2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCACTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715