Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LVJ09_RS01095 Genome accession   NZ_CP090216
Coordinates   220806..222617 (+) Length   603 a.a.
NCBI ID   WP_023607088.1    Uniprot ID   V6Q296
Organism   Vagococcus lutrae strain VF20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 215806..227617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ09_RS01075 (LVJ09_01070) udk 215846..216481 (+) 636 WP_023607084.1 uridine kinase -
  LVJ09_RS01080 (LVJ09_01075) - 216627..218042 (+) 1416 WP_248856428.1 helix-turn-helix domain-containing protein -
  LVJ09_RS01085 (LVJ09_01080) - 218215..219483 (+) 1269 WP_247595609.1 NCS2 family permease -
  LVJ09_RS01090 (LVJ09_01085) - 219563..220759 (+) 1197 WP_274981709.1 competence protein CoiA -
  LVJ09_RS01095 (LVJ09_01090) pepF 220806..222617 (+) 1812 WP_023607088.1 oligoendopeptidase F Regulator
  LVJ09_RS01100 (LVJ09_01095) - 222674..223693 (+) 1020 WP_274981710.1 zinc-binding alcohol dehydrogenase family protein -
  LVJ09_RS01105 (LVJ09_01100) - 223719..224399 (+) 681 WP_274981711.1 NAD(P)H-dependent oxidoreductase -
  LVJ09_RS01110 (LVJ09_01105) - 224400..224576 (+) 177 WP_248856136.1 hypothetical protein -
  LVJ09_RS01115 (LVJ09_01110) - 224605..225114 (+) 510 WP_248856135.1 gamma carbonic anhydrase family protein -
  LVJ09_RS01120 (LVJ09_01115) - 225143..225856 (-) 714 WP_274981712.1 uracil-DNA glycosylase -
  LVJ09_RS01125 (LVJ09_01120) infC 226127..226648 (+) 522 WP_023605494.1 translation initiation factor IF-3 -
  LVJ09_RS01130 (LVJ09_01125) rpmI 226675..226875 (+) 201 WP_023605495.1 50S ribosomal protein L35 -
  LVJ09_RS01135 (LVJ09_01130) rplT 226921..227280 (+) 360 WP_023605496.1 50S ribosomal protein L20 -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69031.71 Da        Isoelectric Point: 4.8095

>NTDB_id=641232 LVJ09_RS01095 WP_023607088.1 220806..222617(+) (pepF) [Vagococcus lutrae strain VF20]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVRAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMENTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=641232 LVJ09_RS01095 WP_023607088.1 220806..222617(+) (pepF) [Vagococcus lutrae strain VF20]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCGAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGTTAGAAACGTTGTATGTTTACTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTTCAACCAGAATTATTTGAACTAACAGATGAGCAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCATTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAATAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAATACTGATCCGA
AAGTGCGAGAAGCTGCGTTTAAAGGATTATACCAAGTGTATGAACAGTTCCAAAATACATTGGCAACGACACTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAACCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTACCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCTTTAGGGGAAGAATATGGCAAAGTCGTTCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGCAGTGGAGCATATTCATCAGGGGCTTACGATACAGTAC
CTTATATTTTAATGAACTGGCATGATAGTTTAGATCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGCGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGATG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCAGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGCGACTACTTAAACGATTACTACGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAATGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCCGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCTACTTATTTAGAAGAAGCAATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V6Q296

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.866

98.839

0.542