Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LZU96_RS17315 Genome accession   NZ_CP090207
Coordinates   3625518..3626900 (-) Length   460 a.a.
NCBI ID   WP_031376046.1    Uniprot ID   -
Organism   Pantoea agglomerans strain HJS002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3620518..3631900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZU96_RS17295 (LZU96_17295) - 3621670..3622050 (-) 381 WP_094119198.1 hypothetical protein -
  LZU96_RS17300 (LZU96_17300) - 3622163..3623059 (-) 897 WP_233985367.1 LysR family transcriptional regulator -
  LZU96_RS17305 (LZU96_17305) - 3623155..3624156 (+) 1002 WP_233985368.1 zinc-binding alcohol dehydrogenase family protein -
  LZU96_RS17310 (LZU96_17310) nadR 3624192..3625433 (-) 1242 WP_094119195.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LZU96_RS17315 (LZU96_17315) radA 3625518..3626900 (-) 1383 WP_031376046.1 DNA repair protein RadA Machinery gene
  LZU96_RS17320 (LZU96_17320) serB 3626914..3627891 (-) 978 WP_233985369.1 phosphoserine phosphatase -
  LZU96_RS17325 (LZU96_17325) - 3627999..3628649 (+) 651 WP_094119192.1 YtjB family periplasmic protein -
  LZU96_RS17330 (LZU96_17330) yjjG 3628749..3629429 (-) 681 WP_233985370.1 pyrimidine 5'-nucleotidase -
  LZU96_RS17335 (LZU96_17335) rimI 3629448..3629888 (-) 441 WP_233985371.1 ribosomal protein S18-alanine N-acetyltransferase -
  LZU96_RS17340 (LZU96_17340) - 3629860..3630270 (-) 411 WP_233985372.1 DNA polymerase III subunit psi -
  LZU96_RS17345 (LZU96_17345) rsmC 3630377..3631408 (+) 1032 WP_233985373.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49367.94 Da        Isoelectric Point: 7.1938

>NTDB_id=641203 LZU96_RS17315 WP_031376046.1 3625518..3626900(-) (radA) [Pantoea agglomerans strain HJS002]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTS
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEVTSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIDGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=641203 LZU96_RS17315 WP_031376046.1 3625518..3626900(-) (radA) [Pantoea agglomerans strain HJS002]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGCGGCGCAGACTATCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGGATCGCCGCCTCGCCTGCTGCGGCGCGTAACGAGCGTCTGAGCGGTT
ACGCGGGCAGCGCCGGTACCAGTCGGGTACAGAAGCTGTCTGAAATCAGTCTGGAGGCGTTACCGCGCTTCTCGACCAGC
TTCAAAGAGTTTGACCGGGTGCTCGGCGGCGGCGTAGTGCCGGGCAGCGCCATACTGATCGGCGGCAGTCCGGGAGCCGG
TAAATCGACCCTGCTGCTGCAGGTCATGTGTCGCCTGTCGGAAGGGATGAAAACTCTGTACGTCACCGGGGAAGAGTCGC
TGCAACAGGTAGCAATGCGCGCCCATCGTCTGGGATTACCGACCGAAAACGTCAATATGCTGTCGGAAACCAGCATCGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAGCCGCAGCTGATGGTGATTGACTCGATCCAGGTAATGCACATGGCGGAGAT
CCAGTCTTCGCCGGGCAGCGTGGCGCAGGTGCGAGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTGG
CGATCATCATGGTCGGTCACGTCACCAAAGATGGTTCGCTGGCCGGTCCCAAAGTGCTGGAGCACTGTATCGACTGTTCA
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGGTTTGGCGCGGTGAATGAATT
AGGCGTGTTTGCCATGACCGAGCAGGGGATGCGTGAAGTCAGCAACCCGTCGGCCATCTTCCTATCGCGTGGCGAAGAGG
TCACTTCCGGCAGCTCGGTCATGGTGCTGTGGGAAGGAACGCGTCCGCTGCTGGTGGAGATTCAGGCGCTGGTGGACCAT
TCGATGATGGGCAATCCGCGGCGCGTGGCGGTGGGGCTGGAACAGAACCGCCTGGCGATTCTGCTGGCGGTGCTGCACCG
TCATGGCGGGCTGCAGATGGCGGACCAGGATGTGTTCGTTAACGTGGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCTG
ACCTGGCACTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGTTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGGCTGGCAGGCGAAATCCGACCGGTCCCCAGCGGTCAGGAACGTATCTCCGAAGCGGCAAAGCATGGCTTTAAACGGGC
CATTGTGCCGGCTGGCAATGCACCGAAAAAACCGATCGATGGAATGCAGGTTTTCAGCGCGAAGAAGCTGGCGGATGCGC
TGGCGATTCTGGACGACCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424