Detailed information NTG0641179

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: OGM46_RS14990
• Genome accession: NZ_CP107140
• Coordinates: 3043427..3044452 (-)
• Length: 341 a.a.
• NCBI ID: WP_000644908.1
• Uniprot ID: -
• Organism: Escherichia coli strain S4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3038427..3049452

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM46_RS14960 (OGM46_14930)	zapB	3038511..3038756 (+)	246	WP_001296623.1	septal ring assembly protein ZapB	-
OGM46_RS14965 (OGM46_14935)	rraA	3038841..3039326 (-)	486	WP_000872908.1	ribonuclease E activity regulator RraA	-
OGM46_RS14970 (OGM46_14940)	menA	3039419..3040345 (-)	927	WP_001305044.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
OGM46_RS14975 (OGM46_14945)	hslU	3040412..3041743 (-)	1332	WP_001293344.1	HslU--HslV peptidase ATPase subunit	-
OGM46_RS14980 (OGM46_14950)	hslV	3041753..3042283 (-)	531	WP_000208242.1	ATP-dependent protease subunit HslV	-
OGM46_RS14985 (OGM46_14955)	ftsN	3042376..3043335 (-)	960	WP_000068834.1	cell division protein FtsN	-
OGM46_RS14990 (OGM46_14960)	cytR	3043427..3044452 (-)	1026	WP_000644908.1	DNA-binding transcriptional regulator CytR	Regulator
OGM46_RS14995 (OGM46_14965)	priA	3044608..3046806 (-)	2199	WP_001296625.1	primosomal protein N'	Machinery gene
OGM46_RS15000 (OGM46_14970)	rpmE	3047009..3047221 (+)	213	WP_000710769.1	50S ribosomal protein L31	-
OGM46_RS15005 (OGM46_14975)	yiiX	3047282..3047890 (-)	609	WP_000702314.1	YiiX family permuted papain-like enzyme	-
OGM46_RS15010 (OGM46_14980)	metJ	3047950..3048267 (-)	318	WP_000852812.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37847.80 Da
• Isoelectric Point: 6.3842

>NTDB_id=641179 OGM46_RS14990 WP_000644908.1 3043427..3044452(-) (cytR) [Escherichia coli strain S4]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSRAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide

• Length: 1026 bp

>NTDB_id=641179 OGM46_RS14990 WP_000644908.1 3043427..3044452(-) (cytR) [Escherichia coli strain S4]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGTTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAGAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGTCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (176-337)

• Bacterial regulatory proteins, lacI family (LacI) (11-56)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	63.881	98.24	0.628
cytR	Vibrio cholerae C6706	65.138	95.894	0.625