Detailed information NTG0641145

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM46_RS08045
• Genome accession: NZ_CP107140
• Coordinates: 1607723..1608715 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1602723..1613715

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM46_RS08025 (OGM46_08005)	ygbM	1603361..1604137 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM46_RS08030 (OGM46_08010)	ygbN	1604226..1605590 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM46_RS08035 (OGM46_08015)	-	1605733..1606776 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM46_RS08040 (OGM46_08020)	-	1607001..1607552 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM46_RS08045 (OGM46_08025)	rpoS	1607723..1608715 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM46_RS08050 (OGM46_08030)	nlpD	1608778..1609872 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM46_RS08055 (OGM46_08035)	pcm	1610057..1610683 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM46_RS08060 (OGM46_08040)	surE	1610677..1611438 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM46_RS08065 (OGM46_08045)	truD	1611419..1612468 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM46_RS08070 (OGM46_08050)	ispF	1612465..1612944 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM46_RS08075 (OGM46_08055)	ispD	1612944..1613654 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=641145 OGM46_RS08045 WP_000081550.1 1607723..1608715(-) (rpoS) [Escherichia coli strain S4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=641145 OGM46_RS08045 WP_000081550.1 1607723..1608715(-) (rpoS) [Escherichia coli strain S4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715