Detailed information NTG0064113

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HRR21_RS19025
• Genome accession: NZ_AP021892
• Coordinates: 3981163..3982155 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 2018-01-1CC
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3976163..3987155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HRR21_RS18995 (VEGS02_36840)	ispD	3976224..3976934 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HRR21_RS19000 (VEGS02_36850)	ispF	3976934..3977413 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HRR21_RS19005 (VEGS02_36860)	truD	3977410..3978459 (+)	1050	WP_096149017.1	tRNA pseudouridine(13) synthase TruD	-
HRR21_RS19010 (VEGS02_36870)	surE	3978440..3979201 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HRR21_RS19015 (VEGS02_36880)	pcm	3979195..3979821 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HRR21_RS19020 (VEGS02_36890)	nlpD	3980006..3981100 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HRR21_RS19025 (VEGS02_36900)	rpoS	3981163..3982155 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HRR21_RS19030 (VEGS02_36910)	ygbN	3982249..3983613 (-)	1365	WP_049254918.1	GntP family transporter	-
HRR21_RS19035 (VEGS02_36920)	ygbM	3983702..3984478 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HRR21_RS19040 (VEGS02_36930)	ygbL	3984483..3985121 (-)	639	WP_001278994.1	aldolase	-
HRR21_RS19045 (VEGS02_36940)	otnK	3985118..3986380 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=64113 HRR21_RS19025 WP_000081550.1 3981163..3982155(+) (rpoS) [Escherichia coli strain 2018-01-1CC]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=64113 HRR21_RS19025 WP_000081550.1 3981163..3982155(+) (rpoS) [Escherichia coli strain 2018-01-1CC]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715