Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LXM98_RS01600 Genome accession   NZ_CP090182
Coordinates   341594..342067 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain AB1343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 336594..347067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM98_RS01575 (LXM98_01575) - 337058..339163 (-) 2106 WP_233908545.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LXM98_RS01580 (LXM98_01580) - 339203..339332 (-) 130 Protein_301 hypothetical protein -
  LXM98_RS01585 (LXM98_01585) rpoZ 339371..339649 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LXM98_RS01590 (LXM98_01590) gmk 339722..340351 (-) 630 WP_000015937.1 guanylate kinase -
  LXM98_RS01595 (LXM98_01595) ispH 340474..341424 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LXM98_RS01600 (LXM98_01600) fimU 341594..342067 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LXM98_RS01605 (LXM98_01605) pilV 342061..342621 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  LXM98_RS01610 (LXM98_01610) pilW 342622..343623 (+) 1002 WP_230602216.1 PilW family protein Machinery gene
  LXM98_RS01615 (LXM98_01615) pilX 343620..344438 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=641050 LXM98_RS01600 WP_001214061.1 341594..342067(+) (fimU) [Acinetobacter baumannii strain AB1343]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=641050 LXM98_RS01600 WP_001214061.1 341594..342067(+) (fimU) [Acinetobacter baumannii strain AB1343]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987