Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OGM47_RS04650 Genome accession   NZ_CP107137
Coordinates   872131..873555 (+) Length   474 a.a.
NCBI ID   WP_001576845.1    Uniprot ID   -
Organism   Escherichia coli strain S5     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 867131..878555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM47_RS04595 (OGM47_04585) - 867250..867543 (+) 294 WP_001111298.1 phage anti-RecBCD protein -
  OGM47_RS04600 (OGM47_04590) - 867554..867721 (+) 168 Protein_910 DUF2737 family protein -
  OGM47_RS04605 - 867718..868095 (+) 378 WP_050011452.1 ead/Ea22-like family protein -
  OGM47_RS04610 (OGM47_04600) - 868145..868678 (+) 534 WP_369769930.1 ead/Ea22-like family protein -
  OGM47_RS04615 (OGM47_04605) - 868671..868862 (+) 192 WP_029700887.1 hypothetical protein -
  OGM47_RS04620 (OGM47_04610) - 869001..869138 (+) 138 Protein_914 DUF550 domain-containing protein -
  OGM47_RS04625 (OGM47_04615) - 869181..869798 (+) 618 WP_229020449.1 dATP/dGTP pyrophosphohydrolase domain-containing protein -
  OGM47_RS04630 (OGM47_04620) - 869895..870074 (+) 180 WP_001277766.1 Eag protein -
  OGM47_RS04635 (OGM47_04625) - 870175..870519 (+) 345 WP_029700883.1 hypothetical protein -
  OGM47_RS04640 (OGM47_04630) - 870599..870790 (+) 192 WP_000132739.1 AlpA family transcriptional regulator -
  OGM47_RS04645 (OGM47_04635) - 870771..871949 (-) 1179 WP_029700882.1 site-specific integrase -
  OGM47_RS04650 (OGM47_04640) sbcB 872131..873555 (+) 1425 WP_001576845.1 exodeoxyribonuclease I Machinery gene
  OGM47_RS04655 (OGM47_04645) tnpA 873666..874124 (-) 459 WP_001531805.1 IS200/IS605-like element IS200C family transposase -
  OGM47_RS04660 (OGM47_04650) plaP 874341..875699 (-) 1359 WP_000019194.1 putrescine/proton symporter PlaP -
  OGM47_RS04665 (OGM47_04655) yoeI 875689..875751 (-) 63 WP_010723108.1 membrane protein YoeI -
  OGM47_RS04670 (OGM47_04660) yeeY 875966..876895 (-) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  OGM47_RS04675 (OGM47_04665) yeeZ 876941..877765 (-) 825 WP_000754737.1 SDR family oxidoreductase -
  OGM47_RS04680 (OGM47_04670) yoeB 877848..878102 (-) 255 WP_000767819.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  OGM47_RS04685 (OGM47_04675) yefM 878099..878350 (-) 252 WP_001259253.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54334.56 Da        Isoelectric Point: 5.3476

>NTDB_id=641048 OGM47_RS04650 WP_001576845.1 872131..873555(+) (sbcB) [Escherichia coli strain S5]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVILVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=641048 OGM47_RS04650 WP_001576845.1 872131..873555(+) (sbcB) [Escherichia coli strain S5]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTAGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTTTGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

99.156

0.586