Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LXM48_RS14195 Genome accession   NZ_CP090180
Coordinates   2905738..2906892 (+) Length   384 a.a.
NCBI ID   WP_234304202.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2900738..2911892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS14180 (LXM48_14180) - 2902411..2904483 (-) 2073 WP_234304200.1 TonB-dependent copper receptor -
  LXM48_RS14185 (LXM48_14185) - 2904556..2904993 (-) 438 WP_234304201.1 DUF2946 family protein -
  LXM48_RS14190 (LXM48_14190) def 2905084..2905617 (-) 534 WP_004684452.1 peptide deformylase -
  LXM48_RS14195 (LXM48_14195) tsaP 2905738..2906892 (+) 1155 WP_234304202.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LXM48_RS14200 (LXM48_14200) dprA 2906915..2908048 (+) 1134 WP_205667334.1 DNA-processing protein DprA Machinery gene
  LXM48_RS14205 (LXM48_14205) - 2908094..2908663 (+) 570 WP_125281522.1 Sua5/YciO/YrdC/YwlC family protein -
  LXM48_RS14210 (LXM48_14210) - 2909063..2909983 (-) 921 WP_004684446.1 DMT family transporter -
  LXM48_RS14215 (LXM48_14215) - 2910319..2910873 (+) 555 WP_234304203.1 hypothetical protein -
  LXM48_RS14220 (LXM48_14220) - 2910997..2911542 (+) 546 WP_004984048.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42242.15 Da        Isoelectric Point: 7.8309

>NTDB_id=641037 LXM48_RS14195 WP_234304202.1 2905738..2906892(+) (tsaP) [Acinetobacter johnsonii strain DJ-Red]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVTSTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVGSAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKISPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=641037 LXM48_RS14195 WP_234304202.1 2905738..2906892(+) (tsaP) [Acinetobacter johnsonii strain DJ-Red]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCTGGCGTCACTTCAACAGCTCAAGCTGCACCTACACGAAATTACAATCCTCCTGCTTTAAAAGCCAATG
CACCAAATGTTTACGTGGTGAAAAAAGGCGATACCCTTTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGTGACCGTTTATTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGCGCTGCCGATCAGCGTGTCATTGCAGG
TAAAGGGCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGGCTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGATGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAGGGTCAAGAAATTCGTGATCCAAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGTAT
CGGTAATATCATGGTATTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAAATTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.661