Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LXM48_RS13805 Genome accession   NZ_CP090180
Coordinates   2819183..2819530 (-) Length   115 a.a.
NCBI ID   WP_171056712.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2814183..2824530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS13785 (LXM48_13785) - 2814224..2814967 (-) 744 WP_114392530.1 FHA domain-containing protein -
  LXM48_RS13790 (LXM48_13790) gspD 2815054..2817411 (-) 2358 WP_114392533.1 type II secretion system secretin GspD -
  LXM48_RS13795 (LXM48_13795) - 2817451..2818275 (-) 825 WP_039890327.1 type II secretion system protein N -
  LXM48_RS13800 (LXM48_13800) gspN 2818275..2818985 (-) 711 WP_234305120.1 type II secretion system protein N -
  LXM48_RS13805 (LXM48_13805) hns 2819183..2819530 (-) 348 WP_171056712.1 H-NS histone family protein Regulator
  LXM48_RS13810 (LXM48_13810) - 2819658..2820086 (-) 429 WP_010325723.1 thioesterase family protein -
  LXM48_RS13815 (LXM48_13815) - 2820094..2821287 (-) 1194 WP_234304164.1 heme biosynthesis protein HemY -
  LXM48_RS13820 (LXM48_13820) - 2821292..2822134 (-) 843 WP_234304165.1 hypothetical protein -
  LXM48_RS13825 (LXM48_13825) - 2822131..2822910 (-) 780 WP_234304166.1 uroporphyrinogen-III synthase -
  LXM48_RS13830 (LXM48_13830) hemC 2822923..2823843 (-) 921 WP_234304167.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12852.75 Da        Isoelectric Point: 9.5383

>NTDB_id=641032 LXM48_RS13805 WP_171056712.1 2819183..2819530(-) (hns) [Acinetobacter johnsonii strain DJ-Red]
MLVNGVNVMPDISNLSVEELKRLQIEAEALIASKKDQAIEDAYTQINAIAENVGLSIEQILEFGATKRKKGTRKSVEPRY
RNKGNAAETWTGRGKQPRWLVAQLEKGAKLEDFLI

Nucleotide


Download         Length: 348 bp        

>NTDB_id=641032 LXM48_RS13805 WP_171056712.1 2819183..2819530(-) (hns) [Acinetobacter johnsonii strain DJ-Red]
ATGTTGGTTAATGGAGTTAATGTAATGCCAGATATTAGTAATTTATCCGTAGAAGAGTTAAAGCGTCTACAAATCGAAGC
GGAAGCTTTAATTGCATCTAAAAAAGATCAAGCAATTGAAGATGCTTATACCCAAATTAACGCGATTGCGGAAAATGTAG
GCTTAAGCATTGAGCAAATTTTAGAGTTTGGCGCGACAAAGCGTAAAAAAGGCACACGTAAGTCGGTTGAACCGCGTTAC
CGTAACAAAGGCAATGCTGCTGAGACATGGACTGGCCGTGGTAAGCAACCACGTTGGTTGGTGGCTCAGTTAGAAAAAGG
TGCGAAGCTTGAAGATTTTCTAATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(19-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

86.792

92.174

0.8