Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LXM48_RS13270 Genome accession   NZ_CP090180
Coordinates   2700941..2703163 (+) Length   740 a.a.
NCBI ID   WP_234304127.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2695941..2708163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS13245 (LXM48_13245) lnt 2696367..2697926 (+) 1560 WP_058868824.1 apolipoprotein N-acyltransferase -
  LXM48_RS13250 (LXM48_13250) - 2697993..2698331 (-) 339 WP_058868823.1 tRNA-binding protein -
  LXM48_RS13255 (LXM48_13255) - 2698493..2698828 (-) 336 WP_058868822.1 hypothetical protein -
  LXM48_RS13260 (LXM48_13260) gspG 2699112..2699549 (-) 438 WP_058868821.1 type II secretion system major pseudopilin GspG -
  LXM48_RS13265 (LXM48_13265) gspF 2699583..2700788 (-) 1206 WP_058868820.1 type II secretion system inner membrane protein GspF -
  LXM48_RS13270 (LXM48_13270) priA 2700941..2703163 (+) 2223 WP_234304127.1 primosomal protein N' Machinery gene
  LXM48_RS13275 (LXM48_13275) - 2703246..2705087 (+) 1842 WP_234304128.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LXM48_RS13280 (LXM48_13280) - 2705138..2706013 (+) 876 WP_058868817.1 Hsp33 family molecular chaperone HslO -
  LXM48_RS13285 (LXM48_13285) - 2706213..2706665 (+) 453 WP_058868816.1 DUF2147 domain-containing protein -
  LXM48_RS13290 (LXM48_13290) - 2706809..2707762 (+) 954 WP_058868815.1 DnaJ C-terminal domain-containing protein -
  LXM48_RS13295 (LXM48_13295) - 2707773..2708129 (+) 357 WP_058868814.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84202.11 Da        Isoelectric Point: 8.9695

>NTDB_id=641028 LXM48_RS13270 WP_234304127.1 2700941..2703163(+) (priA) [Acinetobacter johnsonii strain DJ-Red]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQRFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=641028 LXM48_RS13270 WP_234304127.1 2700941..2703163(+) (priA) [Acinetobacter johnsonii strain DJ-Red]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCGATTGGTGA
AGTGATGCATGCCGCTTTACCCAGCTTTTTACGCCAAGGCAAACCTTATAATCTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACCGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTATTTACAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCTCTT
CCGCATCTGGGTTTGATTGTCTTAGATGAAGAACATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCGGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGCGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAACTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAATCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTGGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAAATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTAGTGGCGATTTTAGACATCGACTCAGGCCTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAAAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGACCATC
CTTTGCTGAATACCCTGCTAGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGATTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGACCGATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.956

98.784

0.711