Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LXM48_RS01250 Genome accession   NZ_CP090180
Coordinates   242900..243757 (+) Length   285 a.a.
NCBI ID   WP_010327571.1    Uniprot ID   A0AA42M8G5
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 237900..248757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS01225 (LXM48_01225) - 238511..238885 (-) 375 WP_029575121.1 hypothetical protein -
  LXM48_RS01230 (LXM48_01230) - 239098..240150 (-) 1053 WP_228140122.1 sensor domain-containing diguanylate cyclase -
  LXM48_RS01235 (LXM48_01235) - 240430..241005 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  LXM48_RS01240 (LXM48_01240) - 241096..241806 (-) 711 WP_010327572.1 DUF3108 domain-containing protein -
  LXM48_RS01245 (LXM48_01245) - 241962..242639 (-) 678 WP_004977854.1 hypothetical protein -
  LXM48_RS01250 (LXM48_01250) tonB2 242900..243757 (+) 858 WP_010327571.1 TonB family protein Machinery gene
  LXM48_RS01255 (LXM48_01255) - 243803..244162 (-) 360 WP_234305135.1 hypothetical protein -
  LXM48_RS01260 (LXM48_01260) ybeY 244314..244793 (-) 480 WP_234304470.1 rRNA maturation RNase YbeY -
  LXM48_RS01265 (LXM48_01265) - 244851..245927 (-) 1077 WP_004977846.1 PhoH family protein -
  LXM48_RS01270 (LXM48_01270) miaB 245966..247423 (-) 1458 WP_010327568.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32557.05 Da        Isoelectric Point: 6.0664

>NTDB_id=641009 LXM48_RS01250 WP_010327571.1 242900..243757(+) (tonB2) [Acinetobacter johnsonii strain DJ-Red]
MPLAHDWWKDPIFTATVVLAVFLHLVILTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEEQPETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDVSAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDTKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=641009 LXM48_RS01250 WP_010327571.1 242900..243757(+) (tonB2) [Acinetobacter johnsonii strain DJ-Red]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTCGTGCTGGCGGTATTTTTGCATCTCGTAAT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTGACTTTGCGTCCTTCAGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAGGGTTCAGGGACTTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAAGAGCAGCCTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTGATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAGATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTGCAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCCAAGCAAGATGTTTCGGCAGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAGTTTTATGGCAACCGTTACTACCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGTATCCGTGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATACCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

73.929

98.246

0.726