Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LXG94_RS25650 Genome accession   NZ_CP090179
Coordinates   3277540..3278058 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain XH2145     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3272540..3283058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS25640 (LXG94_25640) gshA 3275260..3276828 (+) 1569 WP_017817672.1 glutamate--cysteine ligase -
  LXG94_RS25645 (LXG94_25645) - 3276890..3277453 (+) 564 WP_005448430.1 hypothetical protein -
  LXG94_RS25650 (LXG94_25650) luxS 3277540..3278058 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  LXG94_RS25655 (LXG94_25655) - 3278151..3279425 (-) 1275 WP_005446238.1 HlyC/CorC family transporter -
  LXG94_RS25660 (LXG94_25660) - 3279580..3280374 (-) 795 WP_038897985.1 inner membrane protein YpjD -
  LXG94_RS25665 (LXG94_25665) ffh 3280588..3281970 (+) 1383 WP_005446242.1 signal recognition particle protein -
  LXG94_RS25670 (LXG94_25670) rpsP 3282181..3282429 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  LXG94_RS25675 (LXG94_25675) rimM 3282458..3283006 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=640993 LXG94_RS25650 WP_005448429.1 3277540..3278058(+) (luxS) [Vibrio harveyi strain XH2145]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=640993 LXG94_RS25650 WP_005448429.1 3277540..3278058(+) (luxS) [Vibrio harveyi strain XH2145]
ATGCCTTTATTAGACAGTTTTACCGTAGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTTTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCTGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855