Detailed information NTG0640990

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LXG94_RS25520
• Genome accession: NZ_CP090179
• Coordinates: 3254769..3255752 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain XH2145
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3249769..3260752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXG94_RS25485 (LXG94_25485)	ftsB	3249775..3250056 (+)	282	WP_005452106.1	cell division protein FtsB	-
LXG94_RS25490 (LXG94_25490)	ispD	3250058..3250768 (+)	711	WP_038899663.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LXG94_RS25495 (LXG94_25495)	ispF	3250783..3251259 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LXG94_RS25500 (LXG94_25500)	truD	3251305..3252348 (+)	1044	WP_038899661.1	tRNA pseudouridine(13) synthase TruD	-
LXG94_RS25505 (LXG94_25505)	surE	3252348..3253124 (+)	777	WP_009698768.1	5'/3'-nucleotidase SurE	-
LXG94_RS25510 (LXG94_25510)	-	3253124..3253750 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LXG94_RS25515 (LXG94_25515)	-	3253765..3254688 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
LXG94_RS25520 (LXG94_25520)	rpoS	3254769..3255752 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
LXG94_RS25525 (LXG94_25525)	mutS	3255872..3258433 (-)	2562	WP_038899660.1	DNA mismatch repair protein MutS	-
LXG94_RS25530 (LXG94_25530)	pncC	3258519..3259001 (+)	483	WP_038899659.1	nicotinamide-nucleotide amidase	-
LXG94_RS25535 (LXG94_25535)	recA	3259203..3260246 (+)	1044	WP_005436413.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=640990 LXG94_RS25520 WP_005452115.1 3254769..3255752(+) (rpoS) [Vibrio harveyi strain XH2145]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=640990 LXG94_RS25520 WP_005452115.1 3254769..3255752(+) (rpoS) [Vibrio harveyi strain XH2145]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTCTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACTTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856