Detailed information NTG0640970

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: LXG94_RS21495
• Genome accession: NZ_CP090179
• Coordinates: 2405151..2406158 (+)
• Length: 335 a.a.
• NCBI ID: WP_038897744.1
• Uniprot ID: -
• Organism: Vibrio harveyi strain XH2145
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2400151..2411158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXG94_RS21470 (LXG94_21470)	rplD	2400193..2400795 (-)	603	WP_005435074.1	50S ribosomal protein L4	-
LXG94_RS21475 (LXG94_21475)	rplC	2400813..2401442 (-)	630	WP_005435072.1	50S ribosomal protein L3	-
LXG94_RS21480 (LXG94_21480)	rpsJ	2401457..2401768 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
LXG94_RS21485 (LXG94_21485)	rpmE	2402225..2402446 (-)	222	WP_005450576.1	50S ribosomal protein L31	-
LXG94_RS21490 (LXG94_21490)	priA	2402743..2404944 (+)	2202	WP_038897745.1	primosomal protein N'	-
LXG94_RS21495 (LXG94_21495)	cytR	2405151..2406158 (+)	1008	WP_038897744.1	DNA-binding transcriptional regulator CytR	Regulator
LXG94_RS21500 (LXG94_21500)	-	2406324..2406869 (+)	546	WP_005450581.1	SPOR domain-containing protein	-
LXG94_RS21505 (LXG94_21505)	hslV	2407190..2407741 (+)	552	WP_009698878.1	ATP-dependent protease subunit HslV	-
LXG94_RS21510 (LXG94_21510)	hslU	2407771..2409102 (+)	1332	WP_009698879.1	HslU--HslV peptidase ATPase subunit	-
LXG94_RS21515 (LXG94_21515)	-	2409411..2410328 (+)	918	WP_005450584.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
LXG94_RS21520 (LXG94_21520)	rraA	2410404..2410931 (+)	528	WP_005450585.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36884.47 Da
• Isoelectric Point: 5.9796

>NTDB_id=640970 LXG94_RS21495 WP_038897744.1 2405151..2406158(+) (cytR) [Vibrio harveyi strain XH2145]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACELAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKEEQYSIVADFSFEGGVQAVRKLLELPEPPTA
LFCHCDTMAIGAIQEAKRLGLRIPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPPLR

Nucleotide

• Length: 1008 bp

>NTDB_id=640970 LXG94_RS21495 WP_038897744.1 2405151..2406158(+) (cytR) [Vibrio harveyi strain XH2145]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGGGTATCTACTGCTACGGTATCGCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCATCAACAAGAAAGAGAGTGGAAGATGCCGTACTTGAAGCTGGTTATTCACCGAATTCATTAGCTCGTAATT
TACGTAGAAATGAATCAAAGACCATTGTCACTATCGTACCGGACATATGCGATCCGTATTTCTCTGAAATCATTCGCGGT
ATCGAAGATGCAGCAATGGAACACGGTTACCTAGTTCTTCTTGGCGATAGCGGTCAGCAGAAAAAGCGAGAAAGCTCATT
CGTAAACTTAGTATTCACCAAGCAAGCTGATGGCATGTTACTACTGGGCACCGACTTACCATTCGATGTCAGCAAGCCAG
AGCAGAAAAACCTACCACCAATGGTCATGGCGTGCGAATTGGCTCCTGAGCTGGAACTACCAACGGTGCATATCGATAAC
TTGACCTCTGCATTTGAAGCCGTGAACTACCTGACGCAACTTGGTCACAAGCGTATTGCTCAGATCTCTGGTCCAGATAC
TGCGGTGCTGTGCCAGTTCCGCCAACAAGGTTACCAACAAGCACTTCGCCGTGCTGGTATTAGTAAAGAAGAGCAATACA
GCATTGTGGCTGACTTCTCTTTCGAAGGTGGCGTTCAAGCCGTACGCAAACTTCTCGAACTGCCTGAACCACCAACCGCT
CTATTCTGTCACTGTGACACCATGGCGATTGGTGCTATTCAAGAGGCGAAACGTCTTGGCCTCCGTATTCCGCAGGATTT
GTCGGTTGTCGGCTTTGATGATATTCAATTCGCGCAATACTGCGATCCACCGTTAACCACCATCTCTCAACCACGTTATG
AGATTGGTCGCCAAGCAATGTTAATGATGCTAGAGCTACTGAAAGGTCACGATGTGCACTCAGGCTCTCGCTTGCTTGAA
ACTAAATTAGTTGTGCGTGGCAGTGCAGCACCACCACCTTTGCGCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	96.084	99.104	0.952
cytR	Vibrio cholerae C6706	90.361	99.104	0.896