Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OGM48_RS04330 Genome accession   NZ_CP107134
Coordinates   908012..908452 (-) Length   146 a.a.
NCBI ID   WP_000360914.1    Uniprot ID   A0A0H2YVZ3
Organism   Escherichia coli strain S6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 903012..913452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM48_RS04305 (OGM48_04300) coaE 903502..904122 (-) 621 WP_001269520.1 dephospho-CoA kinase -
  OGM48_RS04310 (OGM48_04305) - 904147..904191 (+) 45 WP_120795372.1 protein YacM -
  OGM48_RS04315 (OGM48_04310) guaC 904347..905390 (+) 1044 WP_001217320.1 GMP reductase -
  OGM48_RS04320 (OGM48_04315) hofC 905425..906627 (-) 1203 WP_000157289.1 protein transport protein HofC -
  OGM48_RS04325 (OGM48_04320) gspE 906617..908002 (-) 1386 Protein_846 type II secretion system protein GspE -
  OGM48_RS04330 (OGM48_04325) pilA 908012..908452 (-) 441 WP_000360914.1 prepilin peptidase-dependent pilin Machinery gene
  OGM48_RS04335 (OGM48_04330) nadC 908656..909549 (-) 894 WP_001135168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OGM48_RS04340 (OGM48_04335) ampD 909637..910188 (+) 552 WP_000923703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OGM48_RS04345 (OGM48_04340) ampE 910185..911039 (+) 855 WP_000171980.1 beta-lactamase regulator AmpE -
  OGM48_RS04350 (OGM48_04345) aroP 911082..912452 (-) 1371 WP_000399017.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15620.77 Da        Isoelectric Point: 4.5237

>NTDB_id=640970 OGM48_RS04330 WP_000360914.1 908012..908452(-) (pilA) [Escherichia coli strain S6]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=640970 OGM48_RS04330 WP_000360914.1 908012..908452(-) (pilA) [Escherichia coli strain S6]
ATGGACAAGCAACGCGGTTTTACACTTATTGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YVZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363