Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   LXN10_RS05120 Genome accession   NZ_CP090177
Coordinates   1008797..1009177 (+) Length   126 a.a.
NCBI ID   WP_375724817.1    Uniprot ID   -
Organism   Arcobacter sp. KX21116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1003797..1014177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN10_RS05095 (LXN10_05090) - 1004093..1004431 (-) 339 WP_129099504.1 hypothetical protein -
  LXN10_RS05100 (LXN10_05095) - 1004526..1005554 (-) 1029 WP_375724813.1 hypothetical protein -
  LXN10_RS05105 (LXN10_05100) - 1005574..1006926 (-) 1353 WP_375724814.1 class II 3-deoxy-7-phosphoheptulonate synthase -
  LXN10_RS05110 (LXN10_05105) - 1006955..1007947 (-) 993 WP_375724815.1 transaldolase -
  LXN10_RS05115 (LXN10_05110) serB 1008067..1008687 (-) 621 WP_375724816.1 phosphoserine phosphatase SerB -
  LXN10_RS05120 (LXN10_05115) dprB 1008797..1009177 (+) 381 WP_375724817.1 Holliday junction resolvase RuvX Machinery gene
  LXN10_RS05125 (LXN10_05120) lpoB 1009210..1009821 (-) 612 WP_375724818.1 penicillin-binding protein activator LpoB -
  LXN10_RS05130 (LXN10_05125) - 1009830..1010273 (-) 444 WP_375724819.1 YcfL family protein -
  LXN10_RS05135 (LXN10_05130) - 1010283..1011620 (-) 1338 WP_375724820.1 COG3014 family protein -
  LXN10_RS05140 (LXN10_05135) acpS 1011623..1011973 (-) 351 WP_375724821.1 holo-ACP synthase -
  LXN10_RS05145 (LXN10_05140) - 1012073..1012840 (-) 768 WP_375724822.1 hypothetical protein -
  LXN10_RS05150 (LXN10_05145) - 1012989..1013645 (+) 657 WP_375724823.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14298.59 Da        Isoelectric Point: 9.4699

>NTDB_id=640945 LXN10_RS05120 WP_375724817.1 1008797..1009177(+) (dprB) [Arcobacter sp. KX21116]
MKLAAIDIGLKRIGLALSLTKSLVTPQTAILRKNRNQASNDVDSFLKEWEIDKLIVGFPSSSDDMQKRVKHFVNLLKFEG
EIAFQEENMSSIEAEELMKGDIKYKRDGRVDSLAAKIILERYLAKN

Nucleotide


Download         Length: 381 bp        

>NTDB_id=640945 LXN10_RS05120 WP_375724817.1 1008797..1009177(+) (dprB) [Arcobacter sp. KX21116]
TTGAAATTAGCAGCTATTGATATTGGATTAAAAAGAATTGGCCTAGCGCTAAGCCTAACTAAGAGTTTAGTTACCCCACA
AACAGCCATCTTAAGAAAGAATAGGAACCAAGCTTCAAATGATGTTGATAGCTTTTTAAAAGAGTGGGAAATAGATAAAT
TAATTGTAGGATTTCCTAGTTCCAGTGATGATATGCAAAAAAGAGTAAAACACTTCGTAAATCTTCTAAAATTTGAAGGT
GAGATTGCTTTTCAAGAAGAAAATATGAGCTCAATAGAAGCAGAAGAGCTAATGAAAGGTGATATAAAATATAAAAGAGA
TGGGAGAGTTGACTCCCTTGCTGCTAAAATAATACTTGAGAGATATTTAGCAAAAAATTAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.394

100

0.508